Blastochloris viridis: BVIR_889
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Entry
BVIR_889 CDS
T04109
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bvr
Blastochloris viridis
Pathway
bvr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bvr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BVIR_889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvr03021
]
BVIR_889
Transcription machinery [BR:
bvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BVIR_889
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
Herpes_UL25
AtMg01350
Motif
Other DBs
NCBI-ProteinID:
ALK08681
UniProt:
A0A0H5B760
LinkDB
All DBs
Position
complement(970131..972188)
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AA seq
685 aa
AA seq
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MATKSKAKAVLSATPKAVKPKEEGQAPEKETDAPDGPLLDLSDAAVRKMIKLAKKRGYVT
YEELNDVMPSEEVTSEQIEDTLAMLNEMGINVIEAEEAEAEEQAEAEQGAEEEEPEAGDL
VEATSARTPARSETKSEPSERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIA
GLCESPLTFQAIIIWRDELMEGKVLLRDIIDLEATYAGPEGKNPPQQDGEVPKMASDAAP
PLAETEPPVPDPSEFDDEDDLENSLSLAAMEAELKPAVLKTFDTIADNYTKLRRLQEENV
KNKLKNLTLSPAQERKYKKLKDDIVTEVKSLSLNQARIDALVEQLYDINKRLVSFEGRLM
RLAESYGVDRADFLRNYQGSELDPKWLLRVSKLGARGWKNFITHEKDGIKNIRGDIHNLA
ADTGLEIQEFRKIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNA
ILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagagcaaggcgaaggctgttctgtcggcaacgccgaaggcggtgaagccg
aaggaagagggtcaggctccggagaaggagaccgacgcccccgacggcccgctgctcgac
cttagcgacgccgccgtccgaaagatgatcaagctcgccaagaagcggggctacgtcacc
tatgaggaactgaacgacgtgatgccctccgaggaggtcacgtccgagcagatcgaggac
accctcgccatgctcaacgagatgggcatcaacgtcatcgaggccgaagaggccgaagcc
gaggagcaggccgaagccgagcagggggcggaagaggaagagcccgaggccggtgacctg
gtcgaggcgacctccgcccgcaccccggcccgctcggagaccaagtccgagccgtccgag
cgcaccgacgaccctgtccgcatgtatctgcgcgagatgggctcggtcgagctgctgtcg
cgcgagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgaggcgatgatcgcc
ggcctgtgcgaaagccccctcaccttccaggccatcatcatctggcgcgatgaattgatg
gaaggcaaggtgctgctccgcgacattatcgacctggaagccacctacgccgggccggaa
ggcaagaacccgccgcagcaggacggcgaggtgccgaagatggcctccgacgccgcgccg
ccgctggccgagaccgagccgccggtgccggacccgtccgagttcgacgacgaggacgat
ttggagaactcgctgtcgctggcggcgatggaagccgagctcaagccggcggtgctgaag
acgttcgacaccatcgccgacaactacaccaagctgcggcggctccaggaagagaacgtc
aagaacaagctgaagaacctgacgctgtcgccggcccaggagcgcaagtacaagaagcta
aaggacgacatcgtcaccgaggtgaaaagcctctcgctcaaccaggcccgcatcgacgcc
ctggtcgagcagctctacgacatcaacaagcgcctggtgtcgttcgaaggccgcctgatg
cggctggccgaaagctatggcgtcgaccgcgccgacttcctgcgcaactaccagggctcg
gagctcgaccccaagtggctcttgcgcgtctccaagctcggtgcccgcggctggaagaac
ttcatcacccacgagaaggacggcatcaagaacatccgcggcgacatccacaatctcgcc
gccgatacgggacttgagatccaagagttccgcaagatcgtccagatggtgcagaagggc
gagcgcgaagcccgccaagccaagaaggagatggtggaggcgaaccttcgcctcgtcatt
tccatcgccaagaaatacaccaaccgcggcctgcagttcctcgatttgatccaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgagtaccgccgcggctacaagttctcg
acctacgcgacgtggtggatccggcaggccatcacccggagcatcgccgaccaggcccgc
accatccgcatcccggtccacatgatcgagacgatcaacaagatcgtccgcacctcgcgc
cagatgctgcacgagatcggccgcgagccgaccccggaggaactggccgagaagctcggc
atgccgctggagaaggtgaggaaggtcctcaagatcgccaaggagccgatctcgctcgaa
accccgatcggcgacgaggaggattcgcacctcggcgacttcatcgaggacaagaacgcc
atcctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccaccacgcgggtgctg
gcctcgctgacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccacacgctggaagaggtcggccagcagttcagcgtcacccgcgagcgcatccgc
cagatcgaggccaaggcgctcaggaagctgaagcatccgagccggtcaaggaagttgcgg
agcttcttggataattga
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