Barnesiella viscericola: BARVI_02090
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Entry
BARVI_02090 CDS
T02986
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bvs
Barnesiella viscericola
Pathway
bvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BARVI_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvs03019
]
BARVI_02090
Enzymes [BR:
bvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BARVI_02090
Messenger RNA biogenesis [BR:
bvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BARVI_02090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
HTH_CLF_N
ANKRD13_C
Motif
Other DBs
NCBI-ProteinID:
AHF11832
UniProt:
W0EM28
LinkDB
All DBs
Position
complement(485685..487142)
Genome browser
AA seq
485 aa
AA seq
DB search
MTFEEFGLSEEVMQGLDAMNFQEATPVQEQTIPVILQRRDLIACAQTGTGKTAAYILPLL
NLLSEYPGSGDKVRAIIVAPTRELAQQIDMQFAGFSYFLPISTAVVSGGGDGSSWEQQKR
GLTLGADIIIATPGRLISHLNISNVDFSGVEYFILDEADRMLDMGFYDDIMKIGNSLPAK
RQTIMFSATMPPKIRQLAKNIMNDPVEVNVAISKPNEAIDQSAYVCYETQKMGIIDWLFR
EPTGTKTIIFSSSKQKVKELTFALKRKKYKVAAMHSDLEQPEREAVMLDFKNNKIDILVA
TDVISRGIDIDQIGLVINYDVPHDPEDYIHRIGRTARANAEGTAITFVSEKEQGKFHRIE
SFLGYEIAKRELPEGLGEGPVYAPAQENGGRRRGRGGRNNGGGEGRNGGRSRNRRRGDKG
ARENVSKPPSAKNTKAAAPESPKKEGGENVAQQAQKSSNARRRNHRRRRSRSSNNGNTPS
GQSEQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaattcggattgtcggaagaggttatgcaggggcttgatgccatgaac
tttcaagaggctaccccggtgcaggaacaaaccattcccgtgatattgcaacgaagagat
ttgattgcttgtgcccagaccggtacgggcaagacggctgcctatatcctgcctttgttg
aatctgctctcggagtatccgggcagcggcgacaaggtgcgggcgattattgtggcacct
actcgtgaactggctcagcaaatcgacatgcagtttgccggtttctcctatttcctgccc
atctccacggctgtggtatcgggtgggggcgacggctcttcgtgggaacaacagaagcgc
gggttgaccctgggtgccgatatcattatcgctacaccggggcggctcatctcgcacctg
aacatttcgaatgttgatttttcgggcgtcgagtattttattctcgatgaggccgaccgc
atgctcgacatgggtttctacgacgacatcatgaagataggcaacagcctgcccgccaag
cggcagaccatcatgttctcggccaccatgccgcccaagattcgccagttggctaagaat
atcatgaacgacccggtagaggtgaatgtggccatctcgaagcccaacgaggctatcgac
cagtcggcctacgtctgctacgagactcagaaaatggggattatcgactggctattcaga
gagcccaccggcacgaagaccatcatcttctcgtcgtcgaagcagaaggtgaaggagctg
actttcgcactcaaacggaaaaagtacaaggtggcagccatgcactccgatttggaacag
cccgagcgcgaggcagtcatgctcgatttcaagaacaacaaaatcgacattctggtggct
accgatgtgatttcgcggggtatcgacatcgaccagataggattggtcatcaactacgat
gtgcctcacgaccccgaggattatatccaccgcatcggtcgtacggcccgggccaatgcc
gagggtacggccatcacctttgtctcggagaaggagcagggtaagttccaccgcatcgaa
tcattcttgggttatgagattgccaaacgggaattgcccgagggtttgggcgaaggtccg
gtatatgctcccgcccaggagaacggcggtcgtcgtcgcggccgtggcggtagaaacaac
ggtgggggtgaaggtcgcaacggaggccgttcccgcaatcgtcgtcggggtgataagggg
gccagggagaatgtttcgaagcccccgtcggctaaaaatacgaaggctgccgcacccgaa
agtccgaagaaggaggggggagaaaacgtggcccaacaggctcagaagagctcgaatgca
agacgtcggaatcaccgtcgtcggcgctcccgctcgtccaacaacggcaacactccgtcg
ggacaaagtgagcagtaa
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