Barnesiella viscericola: BARVI_07120
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Entry
BARVI_07120 CDS
T02986
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bvs
Barnesiella viscericola
Pathway
bvs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BARVI_07120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvs03019
]
BARVI_07120
03009 Ribosome biogenesis [BR:
bvs03009
]
BARVI_07120
Enzymes [BR:
bvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BARVI_07120
Messenger RNA biogenesis [BR:
bvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BARVI_07120
Ribosome biogenesis [BR:
bvs03009
]
Prokaryotic type
rRNA helicases
BARVI_07120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHF12569
UniProt:
W0ETP3
LinkDB
All DBs
Position
1715688..1717490
Genome browser
AA seq
600 aa
AA seq
DB search
MKTFQELGICDEILKAITELGYENPMPVQEQVIPHLLNEETDLVALAQTGTGKTAAFGLP
VIQRIDLGLCQPQALILSPTRELCLQIAGDLTDYSQYIDGLRILPVYGGSSIESQIRSLK
KGVHIIVATPGRLLDLLERKTVRLDHVSTVIMDEADEMLNMGFLDSINAILAQVPQERKM
LLFSATMPREIEQIARTYMHNPQEIVVGSRNEGAENVRHVYYMVHAKDKYQALKRIADYY
PNIYGIIFCRTRRETQEIADQLIADGYNADSLHGELSQAQRDAVMQKFRLRNLQLLVATD
VAARGLDVTDLTHVINYGLPDDIETYTHRSGRTGRAGKSGVSVAIIHSREKGKMRAIEKI
IGKKFERGLVPTGEQICEKQLFNLADRIEKVKVNEEAIAKFLPNISRKLGWLTEQDLIKR
IVSLEFNRLIDYYRDTPDLDLPDENTRKPKGESAAKGDRKGRDKDSRTAEEGFERIYINL
GKAHGFFPPNLIEMINSLVPGRVNIGRIDLLPAYSLFDVEKGAAKKVVGALKGCEFYGHR
IYAEIATDKDYAGKGRRKGKEGDSRRKGGDKHYGSARKGGSDSRFKHEHRPSNSRKERRK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttcaagaactgggtatctgtgacgagatactgaaagcgattaccgaattg
ggatatgaaaaccccatgcccgtacaggaacaggtaatcccccacctgctgaacgaagag
accgatctggtcgccctggcccagaccggaacgggcaaaaccgccgccttcggtctgccc
gtgatacaacgcatcgatctcggcctatgccagccacaggcccttatcctgtcgcccacc
cgcgagttgtgcctgcaaatcgccggcgaccttaccgactattcgcaatatatcgacggg
ctgcgcatactccccgtctacggtggctcgagcatcgagagccagataagaagtctgaaa
aaaggggtgcacatcatcgtggccactccgggtcgtctgctcgacctgctcgaacgcaaa
accgtgcgactcgaccacgtctcgaccgtcatcatggacgaggccgacgagatgctcaac
atgggattcctcgacagcatcaacgccattctcgcccaggtacctcaggagcgcaagatg
ctcctcttctcggctaccatgccgcgcgaaatcgaacagatagcccgcacctacatgcac
aatccgcaggagattgtggtgggcagccgcaacgaaggagccgagaatgtgcgccacgtc
tactacatggtacacgccaaggataaataccaggctctcaaacgcattgccgactattac
cccaacatatacggcatcatcttctgccgcacccgccgcgaaactcaggagattgccgac
cagctcattgccgacggctacaacgccgactcgctgcacggcgagctgtcgcaggcccaa
cgcgacgccgtaatgcagaagttccgcctgcgcaacctgcaactgctcgtggctaccgac
gtggcggctcgcgggctcgacgtgaccgacctgacccacgtcatcaactacggtctcccc
gacgacatcgagacctatacccaccgcagcggccgcaccggccgagcgggtaaatcgggc
gtatcggtcgccatcattcacagccgtgagaagggcaagatgcgtgccatcgaaaagatt
atcggcaaaaagttcgaacggggactagtccccaccggcgaacagatttgcgagaagcag
ctcttcaacctggccgaccgcatcgagaaggtgaaggtaaacgaagaggctattgccaaa
ttcctgcccaacatctcacgcaagctggggtggctcaccgagcaggacctcatcaaacgc
atcgtatcgctcgaattcaaccgcctgatcgactactaccgcgatacccccgatctcgac
ctccccgacgagaatacccgcaaacccaaaggcgaatcggctgccaagggcgaccgaaaa
ggacgtgacaaagactcccgcacggccgaggagggatttgagcgcatctacatcaacctg
ggtaaagcccacggcttcttcccgcccaacctcatcgagatgatcaactcgctcgtgccc
gggcgggtcaacatcggacgcatcgacctgctgcccgcctactccctcttcgatgtcgag
aagggtgccgccaagaaggtggtcggagccttgaaagggtgcgaattttacgggcaccgc
atctatgccgagattgccaccgacaaagactacgccggcaaaggccgacgcaagggcaag
gagggcgacagccgacgcaaaggaggcgacaagcactacggttcggcccggaaaggcggt
tcggacagtcgcttcaagcatgaacaccgcccgtcaaactcccgtaaggagcgacggaaa
tag
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