Barnesiella viscericola: BARVI_11100
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Entry
BARVI_11100 CDS
T02986
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bvs
Barnesiella viscericola
Pathway
bvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BARVI_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvs03021
]
BARVI_11100
03400 DNA repair and recombination proteins [BR:
bvs03400
]
BARVI_11100
Enzymes [BR:
bvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BARVI_11100
Transcription machinery [BR:
bvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BARVI_11100
DNA repair and recombination proteins [BR:
bvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BARVI_11100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHF13198
UniProt:
W0EUJ7
LinkDB
All DBs
Position
2596835..2601109
Genome browser
AA seq
1424 aa
AA seq
DB search
MAFRKDNKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDAVIYYERYIVIQPGPQTDLATYDLLSEEEYLNIMDSLPRENQMLEDTD
PNKFIAKMGAEAIYDLLCRLDLDELSYELRHRASTDGSQQRKTEALKRLQVVESFRASKG
RNRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEV
ILRNEKRMLQEAVDSLLDNSRKSSAVKTEANRPLKSLSDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPELKMHECGLPKNMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVVWD
ILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVHL
PLGNEAILEAQLLMLGAHNILNPANGAPITVPSQDMVLGLYYITKLRPGSLGEGLKFYGP
EEAEIAYNEGKVSLHAPVSVVVKDIDKEGNIIEHMVENTSVGRVLVNQYVPQEIGYVNEI
LSKKSLRDIIGRVIKVCGVTRSAQFLDDIKNLGYYMAFKGGLSFNLGDVLVPPEKETLVA
EGNAEVEQIMNNYNMGFITYNERYNQIIDTWTHVNSRLSDILMKQLSADNQGFNSVFMML
DSGARGSKDQIRQLSGMRGLMAKPQKSGAEGGQIIENPILANFKEGLSVLEYFISTHGAR
KGLADTALKTADAGYLTRRLVDVAHDVIIHEEDCGTLRGLVCTEIKNNEEVVASLGERIL
GRVSVHDVVNPLNNEILVHAGEEITEAIAQKIEESPIEQVEIRSVLTCESKKGVCAKCYG
RNLANNRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIAAVSSVLSRYDGILEI
EELRTVDSVSDSGTKVQIVVGRLAEMRIIDANTKMVLMSANIPYGSKLYFNNGDTVKKGD
MICEWDPFNAVIVSEVGGKVKFDAVEEGVTYRVESDEQSGLKEKIIIESKDRTRVPSAQI
LDENGQVIKTYALPVGAHLMIEDGDTIKTGDVFVKIPRAVGKAGDITGGLPRVTELFEAR
NPSNPAVVSEIDGEVIFGKVKRGNREISVVSKTGETKKYLVPLSKQILVQENDYVRAGTP
LSDGAVTPSDILAIKGPTAVQEYIVNEVQDVYRMQGVKINDKHFEVIVRQMMRKVQILDP
GDTRFLEQQIVDKRDFMDENDRIWGKKVVTDPGDSQTLKAGQIVTARKLRDENSALKRKD
LKLIQVRDAIPATSEQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVDTLEGMK
ENVICGHLIPAGTGQREFDKLIVGSKEEFDRVFANRKNVTDFSN
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataacaaaataaagagtaacttttcgaagatttcgattggtttg
gcttcgcccgaagagattttggaaaattcgagcggcgaggtgctgaaacccgaaaccatc
aactaccgtacctataaacccgagcgggacggtcttttctgcgaacgtatattcgggcct
gtcaaggactacgagtgccattgcggaaaatacaaacgtatccgttacaaagggattgtc
tgcgaccgatgcggtgtcgaggtgaccgagaagaaggtgcgccgcgaacgtatgggtcac
atccaactggtggtgcccgtagcccacatctggtatttccgttcgttgcccaacaagatt
gggtatctgttgggattgcccagcaagaaactcgacgccgtgatctattacgagcgttac
atcgtgatacaaccgggtcctcaaaccgacctggctacttacgacctcctctccgaagag
gaatatctcaacatcatggactcgcttccccgcgagaaccagatgctcgaagataccgat
cccaacaagttcatcgccaagatgggtgccgaggctatctatgatctgctgtgccgtctc
gacctcgacgaactctcctacgagctgcgtcaccgcgccagcaccgacggctcgcaacaa
cgcaagaccgaggctttgaaacgcctccaagtggttgagtcgttccgggcttccaagggg
cgcaaccgtcccgagtggatgatcttgaaggtgattcccgtgattccccccgaactgcgt
ccgttggttcccctcgatggtggacgtttcgccacgagcgacctcaacgacctctatcgc
cgggtaattatccgtaacaaccgtctgaaacggttgatggaaatcaaggcccccgaggtg
attctgcgcaacgaaaaacgtatgttgcaagaggctgtcgactcgctgctcgacaactcg
cgcaaatcgagtgccgtgaagaccgaggccaaccgtccgttgaaatcactctccgacagc
ttgaaaggtaaacaaggtcgtttccgtcagaacctgctcggtaaacgtgtagactactcg
gcccgttcggttatcgttgtaggtcctgagttgaagatgcacgaatgcggtctgcccaag
aacatggcagccgaactttataaacccttcattatccgcaagctcatcgagcgcggtatt
gtcaagaccgtgaaatcggccaagaagattgtggatcgcaaggagcccgtcgtatgggat
atcctcgaacacgtgatgaagggtcaccccgtgctgctgaaccgtgccccgacgttgcac
cgtctgggtatccaggccttccagcccaagatgatcgagggtaaggctatccaactgcac
ccgctggcatgtacggcattcaacgccgacttcgatggtgaccagatggccgtacacttg
cccctcggcaacgaggctattctcgaagcccaattgctgatgctgggagcccacaacatt
ctgaaccctgccaacggagctcctatcaccgtgccttcgcaggacatggtattgggtctg
tactacatcaccaaactgcgtcccggttcgctgggcgagggcttgaaattctacggcccc
gaagaggccgagattgcctacaacgaaggtaaggtgtcgttgcacgctcccgtatcggtg
gtagtaaaagacatcgacaaagaaggcaacatcatcgagcacatggtcgagaatacatcg
gtaggccgtgtactggtgaaccaatacgtaccccaggagatcggctatgtcaacgagatt
ctctcgaagaaatcgttgcgcgacatcatcggtcgggtcattaaggtatgcggtgtaacc
cgttcggcccagttcctcgacgacatcaagaacctgggttactacatggccttcaagggc
ggtctgtcgttcaacctgggcgacgtgctcgtaccgcctgaaaaggagacattggttgcc
gaaggtaacgccgaggttgagcagattatgaataactacaacatgggtttcattacctac
aacgagcgttacaaccagattatcgatacctggacgcacgtcaactcgcgtctgtccgac
atcttgatgaagcagctttcggccgacaatcaaggtttcaactcggtattcatgatgctc
gactcgggagcccgtggttcgaaggaccagattcgtcagctctccggtatgcgtggtctg
atggccaagccgcagaaatcgggtgccgagggtggtcaaatcatcgagaaccctattttg
gccaacttcaaggagggcttgtcggtgttggagtacttcatctccacgcacggtgctcgt
aagggtcttgccgataccgccttgaagacagccgatgccggttacctgacccgtcgtctg
gtcgacgtagcccacgacgtgattattcacgaggaggactgcggaaccctgcgtggtctg
gtttgcaccgaaattaagaacaacgaagaggtagtagcctcgctgggcgagagaatcctg
ggtcgtgtgtcggttcacgatgtagtgaatccgctgaacaacgagattctggttcacgcc
ggcgaagagatcaccgaggctattgcccagaagatagaagagtcgcctatcgagcaagtc
gagattcgttcggtactcacctgcgaatcgaagaaaggcgtctgcgccaagtgttacggc
cgtaacctggccaacaaccgcatggtacagaaaggtgaggctgtgggtgtgattgctgca
cagtccatcggcgagccgggtacacagctgacactgcgtacgttccacgtcggtggtatc
gcctcgaacatcgctgccgtgtcgagcgtgctttcgcgttacgacggtatcctcgaaatc
gaggagctgcgtaccgtagacagtgtgtcggacagcggtaccaaggtgcagattgtggta
ggacgtttggccgagatgcgtattatcgatgccaacaccaagatggtattgatgtcggcc
aacattccttacggttccaagttgtatttcaacaacggcgacaccgtgaagaagggcgac
atgatttgcgagtgggaccccttcaacgccgttatcgtttcggaggttggcggtaaagtt
aagttcgatgccgtcgaagagggtgttacctatcgtgttgaatcggacgaacagtcgggt
ttgaaagagaagatcattatcgagtcgaaagaccgtacccgcgtaccgtcggctcagatt
ctcgatgagaacggacaggtaatcaaaacatacgcgttgcctgtgggcgctcacttgatg
attgaagacggcgatacgatcaagaccggtgatgtgttcgtgaagataccgcgtgccgta
ggtaaggccggtgatatcacgggtggtctgcctcgtgtaaccgagttgttcgaggcccgt
aacccgtccaaccctgctgtcgtatcggaaatcgatggtgaggttatcttcggtaaagtg
aaacgtggtaaccgtgaaatctcggtcgtttccaagacgggcgagacgaagaaatacctg
gtgcctctgtcgaaacagattctggtacaggagaacgactacgtgcgtgccggtacgccg
ctgtccgatggtgctgttacaccgtccgatattctggccatcaaaggtcccacggctgta
caggaatatatcgtgaacgaggttcaagatgtatatcgtatgcagggtgtgaagatcaac
gacaagcactttgaggtaatcgttcgtcagatgatgcgcaaggtgcagattctcgacccg
ggagatacccgtttcctcgaacagcaaatcgtcgataaacgcgacttcatggacgagaac
gaccgtatctggggcaagaaagtggttaccgatccgggcgattcgcaaacgctcaaagcc
ggtcagattgttacggcccgcaagctgcgcgacgaaaactcggccttgaaacgcaaggac
ctcaaactcattcaggtgcgcgacgctatccccgcaacctccgagcagattctgcaaggt
attacccgtgccgctctgcaaacgtcgagcttcatgtcggctgcttcgttccaggagacg
accaaggtgctcaacgaagctgccatcaacggtaaggtcgataccctcgaaggtatgaag
gagaatgtgatttgcggtcacttgattccggccggtaccggtcaacgcgagttcgacaaa
cttatcgttggctccaaagaggagttcgatcgggtgtttgccaaccgcaagaacgtaacc
gacttctccaattga
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