Barnesiella viscericola: BARVI_13040
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Entry
BARVI_13040 CDS
T02986
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bvs
Barnesiella viscericola
Pathway
bvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BARVI_13040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvs03400
]
BARVI_13040
DNA repair and recombination proteins [BR:
bvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BARVI_13040
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BARVI_13040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
Microtub_bd
Orbi_NS3
Motif
Other DBs
NCBI-ProteinID:
AHF13500
UniProt:
W0ERQ5
LinkDB
All DBs
Position
complement(3061858..3063942)
Genome browser
AA seq
694 aa
AA seq
DB search
MDFKLISPYRPTGDQPEAIDELSRGVLDGTPYQTLLGVTGSGKTFTMANVIERVQKPTLI
LSHNKTLAAQLYNEFKGFFPENAVEYFVSYYDYYQPEAYIPSTDTYIEKDLAINEEIDRL
RLSTTSALLSGRKDVIVVSSVSCLYGIGNPEDFHSNVIEVKVGDNIGRNRLLRHLVDSLY
SRNEVELNRGNFRVKGDTVDIYLAYDDTIVRIEFWGEEIEAIRTIDPATGSSTGSFDAYK
IFPANLFVTTKERIDKAIGEIEIDLGKQVEFFKSIGKELEAKRLYERVTYDVEMIREIGH
CSGIENYSRYFDGREAGTRPFCLLDYFPKDFLTIIDESHVTVPQIRAMYGGDRSRKMNLV
EYGFRLPAAVDNRPLKFDEFESLARQIIYVSATPADYELEKSEGVVVEQVIRPTGLLDPV
IEVRPSLNQIDDLLEEIQLRIERDERVLVTTLTKRMAEELNSYLAKLDISCNYIHSDVDT
LDRIKILDDLRAGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRA
ARNLNGRVIMYADRITESMQKTIDETNRRREKQLAYNEEHHITPKAIQKAKSSILGATAE
AQPQPQPAKPAKGAKPAPAARAYSDEYLEHVDVAADPVVKYMNREQLQKAIERTRRQMVE
AAKKMEFIEAAQYRDELIKLEDLLQQAAADKPTA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaactgatctcaccctatcgccccacgggcgaccaacccgaagctatcgac
gaactgagtcggggtgtgctcgacggcacgccctaccagacgttgctgggtgtcacgggc
tcgggaaagaccttcaccatggccaacgtaatcgagcgggtacagaaacctaccctgatc
ctgagccataacaaaactctggcggcccagctctacaacgagttcaaggggttcttcccc
gagaatgccgtcgagtatttcgtctcctactacgactactaccagcccgaggcctatata
ccctcgaccgacacctatatcgagaaagacctggccatcaacgaggagatagaccgactg
cggctctccaccacctcggccctgctgtcggggcggaaagatgtgattgtggtctcgtcg
gtatcgtgcctctacggcatcggcaaccccgaggatttccacagcaacgtcatcgaggtg
aaggtgggcgacaacatcggccgcaaccggctgttgcggcatctggtcgactcgctctac
tcgcgcaacgaggtggagctcaaccggggcaatttcagggtgaagggcgacacggtcgac
atctacctggcctacgacgataccatcgtgcgcatcgagttctggggcgaggagatcgaa
gcgatacgcaccatcgacccggccacggggagcagcacggggagcttcgacgcctacaag
attttcccggccaacctgtttgtcacgaccaaagagcgcatcgacaaggccatcggcgag
attgaaatcgacctgggcaagcaggtggagttcttcaaatccatcgggaaggaactcgaa
gccaaacggctctacgaaagggtgacctacgacgtggagatgattcgcgagataggccac
tgctcgggcatcgagaactactcgcgctacttcgacggccgcgaggcgggcacccggccc
ttctgcctgctcgactactttcccaaggattttctcaccatcatcgacgagagccacgtg
accgtaccgcaaatccgagccatgtacggcggcgaccgctcccgcaagatgaatctggtg
gaatatggcttccgcctgccggcagcggtggacaaccgccccttgaaattcgacgagttc
gaaagcctggcgcggcagattatctacgtgagtgccacaccggccgactacgaactcgaa
aagagcgagggtgtcgtggtcgaacaggtgattcgacctaccggtctgcttgacccggtc
atcgaggtacggcccagcctcaaccagatagacgacctgctggaagagatacagttgcgc
atcgagcgcgacgagcgggtgctggtcaccacgctcaccaaacgcatggccgaggagctg
aacagctacctggccaagctcgacatcagttgcaactacatacactccgacgtcgacacc
ctcgaccgcatcaagattctcgacgacctgcgggccggggtctacgacgtgctcatcggg
gtcaacctgctgcgcgagggactcgacctgcccgaagtgtcgctggtggctatcctcgat
gccgacaaggaggggttcctgcgctcgcaccggtcgctcacccagacggtgggacgggcc
gcgcgcaacctcaacggacgggtcatcatgtatgccgaccgcattaccgagagcatgcag
aagaccatcgacgagaccaaccgccgacgcgagaaacagttggcctacaacgaggagcac
cacatcacccccaaggccatacagaaggccaagagttcgatactcggtgccaccgccgag
gcccagccgcaaccccaaccggccaagccggcaaagggggcgaaaccggctccggcagcc
cgggcatacagcgacgagtacctcgaacatgtcgatgtggcggccgaccccgtggtgaaa
tacatgaatcgcgaacaactgcaaaaggccatcgagcgcacccgccgacagatggtcgag
gcggccaagaagatggagtttatcgaggcggcccagtatcgcgacgaactgataaaactg
gaagatttactacaacaggcagcagccgacaagcccactgcctaa
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