Phocaeicola vulgatus: BVU_1091
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Entry
BVU_1091 CDS
T00546
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bvu
Phocaeicola vulgatus
Pathway
bvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVU_1091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvu03019
]
BVU_1091
03016 Transfer RNA biogenesis [BR:
bvu03016
]
BVU_1091
Enzymes [BR:
bvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BVU_1091
Messenger RNA biogenesis [BR:
bvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BVU_1091
Transfer RNA biogenesis [BR:
bvu03016
]
Prokaryotic type
tRNA degradation factors
BVU_1091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
SAP_new25
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABR38782
UniProt:
A6KZB8
LinkDB
All DBs
Position
1450028..1452175
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AA seq
715 aa
AA seq
DB search
MAKKKEKKAGKRMKKSEMSERLISLFHTKPNETFSLKQLSSSLNLTTHPLKMLCADIITE
MIEDDFLQEVEKGHYKLNDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNN
DKVKIALFAKRKNRNPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFIPKD
KLKGGKNGDKAVVKIVEWPEEAKNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYPKNV
ETAAEKIPAEISEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIAD
VTHYVKEGGVIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNE
KGEVKDSRIVHTIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAI
DFDRVEVKFEIDETGKPLSVYFKESKEANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFP
YRIHDLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSL
RAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGRTVQEAKYEEL
CDHSSEMEQIAANAERASVKYKQVEFMGERLGMEFDGVISGVTEWGLYVELNENKCEGMI
PMRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKKQLDFALVEK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaagaaagaaaaaaaagcagggaaacgcatgaaaaaaagcgaaatgtctgaa
cgactgataagcttattccacacaaaaccgaacgaaacattcagtctgaaacaattatca
agcagtctgaaccttactacacatcctcttaaaatgctttgtgccgacatcattactgaa
atgattgaggatgattttctgcaagaagtagaaaaaggacactacaaactgaacgaccac
ggtctgattatgactggcgtctttcagcgtaaaagcaacggcaagaactccttcatcccc
gatgatggtggagaaactattttcatagccgaacgtaattcggcacatgccatgaataat
gacaaagtaaaaatagccctctttgccaaacgtaagaaccggaacccggaaggtgaagtg
atagagattctggaacgtgccaacgatacttttgtcggcacactgaaagtagagaaattc
tacgcctttctgctgaccgagaaccgcactctggcaaatgatatttttatcccgaaagat
aagctgaaaggtggaaagaatggggacaaagcagtcgtgaaaattgtagaatggcccgaa
gaggcaaaaaacccgataggacaagtcattgatattttgggaaaagcaggagaaaacaca
actgaaatgcatgccattctggccgaattcggcttaccttacgtatatcccaagaatgta
gaaaccgctgccgaaaagattccggcagagatttccgaggcggactatgcagaacgtgaa
gatttccgcaatgtaacaactttcaccattgaccctaaagatgcaaaggactttgatgac
gcgctctccatccgtctcatcaaaccgggactatgggaagtaggcgtacacattgccgat
gttactcattatgtaaaagaaggaggcgttatcgacaaagaagctgaaaaacgcgctact
tccgtttatctggtagaccgtaccatccccatgttgcccgaacggctgtgtaacttcatc
tgttccctccgccccgacgaagagaaactggcattctccgtcattttcaatatgaatgaa
aagggagaggtgaaagactcgcgcatcgtgcacaccattataaagagcgaccgccgtttc
acctatgaggaggcgcaaaaagtgattgaaacgggtgaaggcgactacaaagaagaaatt
ctggaactgaacaaactggcacaaatcctgcgtaaacaaagattggctgccggtgctatt
gactttgaccgcgtagaagtgaaatttgagatagacgaaaccggcaaaccgctcagtgtc
tacttcaaagaatccaaagaggccaataagttgatagaggaatttatgttgttggccaac
cgcacggttgccgaaaaaatcggtaaagtacctaaaaacaagaaagccaaagtattccct
tatcgtatccacgaccttccggaccccgataaactggagaacttgaattggtttatcaat
cgcttcggatataagatacgtacatcgggtagcaaaactgagatatccaaatccatcaat
cgtttactggacgacataaagaacaagaaagaacaaaatctggtggaaaccgtatccttg
cgtgccatgcaaaaggcccgttattccacacataatattggccactatggtctggcattt
gactattatactcactttacctcacctatccgccgttttccggatatgatggttcatcgt
ctgctcacccgctatctggcaggaggacgtacggtacaggaagcgaaatacgaagaattg
tgtgaccatagctctgaaatggaacaaatcgccgccaatgcggaacgtgcctctgtaaaa
tacaaacaagtagagtttatgggtgaacgtttgggcatggagttcgatggagtcatttcc
ggagttaccgaatggggactttatgtggaactgaacgaaaacaagtgcgaaggtatgatt
cccatgcgtgaccttggtgatgactattatgatttcgatgaaaagaactattgtctgacg
ggacgccggcatcacaaaaaattcagtttgggagatccggttaccattaaagtggcccgc
gccaatctggagaaaaagcaacttgatttcgctttggtcgagaaataa
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