Phocaeicola vulgatus: BVU_2078
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Entry
BVU_2078 CDS
T00546
Name
(GenBank) HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bvu
Phocaeicola vulgatus
Pathway
bvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVU_2078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvu03019
]
BVU_2078
Messenger RNA biogenesis [BR:
bvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BVU_2078
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
Fez1
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
ABR39741
UniProt:
A6L227
LinkDB
All DBs
Position
complement(2692722..2694257)
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AA seq
511 aa
AA seq
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MITTVIIAIVCFAVGGGLSYMLFRYGLKSKYDIIIKEAQTEAEVIKKNKLLEVKEKFLNK
KADLEKEVALRNQKIQQAENKLKQRELMLNQKQEEVQRKRTEAEAIKENLEAQIVIIDKK
KDELDKLQMQEREKLEALSGLSAEEAKERLIESLKEEAKTQAASYINDIMDDAKLTANKE
AKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAATGVEIVVDDT
PEAIVLSAFDPVRREIARLALHQLVTDGRIHPARIEEVVAKVRKQVEEEIIETGKRTTID
LGIHGLHPELIRIIGKMKYRSSYGQNLLQHARETANLCAVMASELGLNPKKAKRAGLLHD
IGKVPDEEPELPHALLGMKIAEKYKEKPDICNAIGAHHDETEMTSLLAPIVQVCDAISGA
RPGARREIVEAYIKRLNDLEQLAMSYPGVTKTYAIQAGRELRVIVGADKIDDKQTESLSG
EIAKKIQDEMTYPGQVKITVIRETRAVSFAK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgataacaacggtaataatagcaattgtgtgtttcgctgtaggtggtggcctatcatac
atgcttttcagatatggcctgaaatctaagtatgacatcatcatcaaagaggcacagacg
gaagctgaagtaattaaaaagaacaagcttttggaagtaaaagaaaaattcctgaacaaa
aaagctgatctggaaaaagaagtcgccctacgtaaccaaaagattcagcaagccgaaaat
aaattaaaacaacgcgaactgatgttgaaccaaaaacaggaagaggttcaacgcaaacgt
acagaagcggaagctatcaaagaaaatctagaagctcaaattgtcatcatagacaagaaa
aaggatgaactggataaattacaaatgcaagaacgtgaaaaactggaagctctttccggt
ctttctgctgaggaggccaaagaacgcctgattgaatctttgaaagaagaagcgaaaaca
caggctgcttcctatattaacgacattatggacgacgccaaattaacagctaataaagaa
gctaaacgtatcgttatccagtctatccaacgagtagccacagaaactgctatcgaaaac
tctgtaaccgtattccatattgaatcggacgaaataaagggacgcatcatcggccgtgaa
gggcgtaatatccgggctttagaagcagcaaccggtgtcgaaatcgttgtagatgacacc
cccgaggctattgtactttcagcgtttgaccctgtacgccgcgaaattgcccgcttagca
ttacaccaactggttacagatggacgtatccacccggcacgcattgaagaagtggtagct
aaagtacgcaaacaggtagaagaagaaattattgaaaccggtaaacgtaccactattgat
ttaggtattcatggcctgcaccctgaattgatccgtattatcggtaagatgaaatatcgg
tcctcatacggtcagaaccttctacaacatgctcgtgaaacagccaatctttgcgctgtg
atggcttctgaactaggtttgaatcctaaaaaagcaaaacgtgccggattactgcatgat
ataggtaaagtacctgatgaagaaccggaattgccgcacgcattgttaggcatgaagata
gccgaaaaatataaagagaaaccagacatatgtaatgctatcggtgctcaccatgacgaa
actgaaatgactagcctgctggctcccatcgtacaggtatgtgatgccatttcaggcgca
cgtccaggcgctcgccgtgaaatcgtagaagcttatatcaagcgtttgaacgatctagaa
caattagccatgtcttatccaggggtaacaaaaacctatgccatccaagctggccgcgaa
ttacgtgtgattgtaggtgccgacaagattgacgacaaacagactgaaagtttatccggt
gaaattgcgaaaaagattcaagacgaaatgacttatccgggacaagtgaagattacagtc
atccgcgaaacacgtgcggtaagtttcgccaaataa
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