Phocaeicola vulgatus: BVU_2638
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Entry
BVU_2638 CDS
T00546
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bvu
Phocaeicola vulgatus
Pathway
bvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVU_2638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvu03019
]
BVU_2638
03400 DNA repair and recombination proteins [BR:
bvu03400
]
BVU_2638
Enzymes [BR:
bvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVU_2638
Messenger RNA biogenesis [BR:
bvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BVU_2638
DNA repair and recombination proteins [BR:
bvu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BVU_2638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABR40290
UniProt:
A6L3M6
LinkDB
All DBs
Position
3345598..3348015
Genome browser
AA seq
805 aa
AA seq
DB search
MIESQIVARVLPSKCREAVKVLLQEVYGYEDFRNLEVYDDLFKGKEKLQLSQGQLIEEVI
MEAEKGIKGDSSAHNLLLTAPTGAGKSLLFQLPAIYLGNEYKLLTLVVSPLKALIVDQVE
ALQELGYERVAYASSDLSPEQKNEVYRRVREGEVDLFYLSPELLLAYDISYFVGERRIGL
VVVDEAHTVTTWGKEFRVDYWFLGRHLEALKNALGYVFPVFALTATAVWNPEGGNDMIFD
TIRSLHLAPCALYVGTVKRENIGFDITAMTIEEGETYDKAKQRTVAARVEDFLDGHKTII
YYPFAGGIDMKLKTWVYPANWHWVASYYGKKDKEQKAEIIQAFKEGEKKIIVATKAFGMG
VDISDIDRVYHVAPSSTFVDYIQEIGRAARDKNITGVAVTDFNERDFYYMKRLHSAGAIS
QEQLGMILKKVWEIYLMKGCSDEMQMSLSDFEFAVKLPRKKNKLEYESDLEQVVKTALLW
IEEDLSFRHGGSPVEINSQTLFSDGYVQEKTGDAAFRKKYKQYMVPVKGVEGVYKVAFES
LWENCFSEMGYREFKRDLYNGNLFEGVRAAAVGKHDVLLKESAADICSKLASLLKSLKDL
LTVSLYGNKGKFEEDDLRSIFAAYDMDVPSAKRFITSLLESRVEEGRSVSYITSAKKKDE
DKLMFTVTRGFDLLLSRYQKLCAQRITGKKGDRLLFYVTPFSDLNMLLNLLSMLNVVDFT
VEGGVPSVGVRVRDAEILKKEAASGDYQNHVLENNEKIFQEQIELFRLFFGNTKLSDEQR
WEFIEDYFTGMSLEGLKEKYSCVVE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgatagagtcacagattgtggcaagagtattgccgtctaaatgccgtgaagcggtaaag
gtccttttgcaggaagtgtacggatatgaagatttccgtaatttagaagtttatgatgac
ttgttcaaaggtaaggaaaaattgcaattgtctcaagggcaattaattgaggaggtcatc
atggaagccgaaaaagggatcaagggtgactcgtctgctcataatttgctcctgacagct
ccgaccggagccggaaaatcattgttgtttcagctccctgccatttatctgggtaatgaa
tataagcttcttactcttgtggtttctccgctgaaagcattgatagtggaccaggttgag
gcgttgcaggagttaggctatgaacgtgtggcgtatgcttcgtccgatctttcacctgaa
caaaagaacgaagtatatcgtcgtgtccgtgaaggggaggttgatcttttttatctttcc
cctgaattattgttggcgtatgatatcagttattttgtaggtgaacgccgcatcggactg
gtagtggttgacgaggctcataccgtgaccacttggggtaaagagttccgggtggattat
tggtttctagggcgtcatttggaagctttaaagaatgcgttggggtatgtattccctgtt
tttgcattgacggccactgctgtgtggaatcccgaaggcgggaacgatatgatttttgat
accatccggtcgttgcatcttgctccgtgtgccttgtatgtgggcacggtgaagcgtgaa
aatatcggctttgacattaccgccatgaccatagaggagggggaaacctacgataaggcc
aagcaacgtactgttgccgcccgggtggaggattttctggacgggcataagactatcatt
tattatccttttgccggaggtatagatatgaaactgaagacctgggtgtatccggctaac
tggcattgggtggcatcttattatggtaaaaaggataaagagcaaaaagccgaaattata
caagcttttaaggagggtgagaaaaagataatcgttgctacgaaagctttcggtatgggg
gtggatatcagtgatattgaccgtgtgtatcatgtggctccatccagcacctttgtcgat
tatattcaggagattggccgtgctgcccgtgataagaacattacgggtgtggcggtgacg
gattttaatgagcgcgacttttattatatgaaacgcctgcattctgcgggtgccatctcc
caggaacagttggggatgattctgaagaaagtttgggaaatatatctgatgaaaggctgt
agtgatgaaatgcagatgtctttatccgattttgaatttgcagtgaagttgcctcgtaaa
aagaacaagctggaatatgaatcggatttggagcaagtcgtcaaaacggctttgttatgg
atagaagaggatttgagtttccggcatggcggttctcctgttgaaatcaattcacagacg
ttgttttccgatggctatgtgcaggaaaagacgggtgatgccgctttccgtaaaaaatac
aagcagtacatggttcccgtgaaaggggttgaaggagtctataaggtggcttttgaatct
ttgtgggagaattgtttctcggagatgggataccgtgagtttaagcgcgatttatacaat
ggaaatctctttgagggagttcgtgcggcagctgtgggtaagcatgatgtcttgttaaaa
gagagtgcggcggatatctgctccaagctggcaagtctcttgaagagtttgaaagatttg
ttgacggtgagtctgtatggtaataaaggaaagttcgaggaggacgatttgcgtagtatt
tttgcggcgtatgatatggatgttccttctgccaagcgttttatcacttcgttactggag
tccagggtagaggagggcagaagtgtgagttacatcaccagtgccaagaagaaagatgaa
gacaaactgatgtttaccgttacccgtggttttgatttgttgctttcccgttaccagaag
ttgtgtgcccagcgtatcacaggaaagaaaggagaccggctgttgttctatgtcactccg
ttctccgatctcaatatgttgctcaacttgttgtctatgctcaatgtggtggactttacc
gtagaggggggtgttccttctgttggagtacgtgtccgtgatgcagagatattgaaaaag
gaagctgcttcgggggactatcagaaccatgtgctggagaataatgagaaaatattccag
gaacagatagagttgttccggctgttctttggcaatacaaaactgagcgatgagcagcga
tgggagtttatagaggattattttacggggatgagtttggagggattgaaagaaaaatat
tcttgtgttgtggaatga
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