Phocaeicola vulgatus: BVU_2933
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Entry
BVU_2933 CDS
T00546
Name
(GenBank) putative transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
bvu
Phocaeicola vulgatus
Pathway
bvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVU_2933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvu03021
]
BVU_2933
03019 Messenger RNA biogenesis [BR:
bvu03019
]
BVU_2933
Transcription machinery [BR:
bvu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BVU_2933
Messenger RNA biogenesis [BR:
bvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BVU_2933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
RBR
NACHT
AAA_25
AAA
FixH
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
ABR40572
UniProt:
A6L4F8
LinkDB
All DBs
Position
complement(3726114..3728123)
Genome browser
AA seq
669 aa
AA seq
DB search
MYNIIQLNDKDLSELQSIAKELGIKKTDSLKKEDLVYKILDEQAIVGATQKVAAEKANES
QPRKRSRINVKKDGDKVYTATKDKAQKLEANTPQPAAAAAETVKETAPVAVTPQTEAVAE
TSAEEKTPKKRGRKPGSKKVTAKTEEQPATKTKETAKEEVKAEAPAKPTPKKAKKEETPA
IPEEKEVILPELEFGSETDDFIPIEDLPSEKIELPTELFGKFEATKVETPAPVQTPAPKF
QPRQQRDQNQKYNNPRNNNYNNPRQANNNNNTTAEGEASASIPQQPERKQVEKPYEFEGI
LTGTGVLEIMPDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGSIRPPKEGE
KYFPLVKVEKINGLDPGLVRDRVPFDHLTPLFPDEKFKLCKGGYSDNLSARVVDMFSPIG
KGQRALIVAQPKTGKTILMKDIANAIAANHPETYMIMLLIDERPEEVTDMARSVNAEVIA
STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGV
DANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNL
SNKRIFPAVNIVASSTRRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKSRLENTKDN
EEFLMSMNS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattattcaattaaacgacaaagacttgtcggaattacaatcgattgccaaa
gagttgggtatcaagaaaacagactctctaaaaaaagaagatctggtttataaaattctg
gacgagcaagccatagtcggagcaacccaaaaagtagcggcagaaaaagccaatgaaagt
caaccccgtaaaagatcacgtatcaacgttaaaaaagacggtgacaaggtctatactgca
accaaggacaaggcacagaaactggaagccaataccccgcagcctgccgccgcagctgcc
gaaacagtaaaagagactgctcctgtagcggtaacaccacaaacagaagccgtggccgaa
acaagcgcggaagaaaaaacacctaaaaaaagaggacgcaaaccgggtagtaagaaagta
acagccaagacagaagaacaacctgcaacgaaaacgaaagaaactgcaaaagaggaagtg
aaagctgaagcaccggcgaaaccgacacccaaaaaagcaaaaaaagaagaaacaccggct
attcccgaagaaaaagaagtgattcttcccgaactggaattcggcagtgaaaccgatgat
tttattcccatcgaggatcttccttcagaaaaaatagaacttcctactgagttgttcggc
aaatttgaggctaccaaagtagaaacaccggctccggtacagacacctgcccccaaattc
caaccacgccagcagcgcgatcaaaatcagaagtacaacaatccgcgcaacaataattac
aacaatcctcgtcaggcaaacaataataacaatacgacggctgagggagaagcgtctgcc
agcattcctcaacaaccggaacgcaaacaggtggaaaagccttacgaatttgaaggtatc
ctgaccggtaccggggtattggaaatcatgcccgacggatacggtttcctccgttcatcc
gattacaactatctttcctcacccgatgatatttacgtttcacaatcgcaaataaaactg
ttcggtttgaagaccggtgatgtagtggaaggctctatccgtccgcccaaagaaggagaa
aaatatttcccgttggtaaaggtggaaaagataaacggtctggatcccggattggtacgt
gaccgcgttccgtttgatcacctgaccccgctgttccccgatgaaaagttcaaactttgc
aaagggggatatagtgataacctttcagcccgtgtggtagatatgttctcacctatcggt
aaaggacagcgtgctttgattgtggcgcaacccaaaaccggtaagacgatcctgatgaaa
gacatcgctaacgcaatcgcagccaaccatccggaaacgtacatgatcatgctgcttatt
gacgaacgtcccgaagaagtgacagatatggcgcgcagcgtaaatgccgaagtgatcgct
tctacatttgacgaaccggcagaacgtcacgtaaagattgcaggtatcgtactggaaaaa
gcgaaacgcatggtagaatgcggtcacgatgtggtaatcttcctcgactctatcacccga
ctggcacgtgcatacaataccgtctctcccgcttccggcaaagtattgtccggtggtgtg
gatgcaaatgccctgcataagcccaaacgtttcttcggtgctgcccgtaacattgaaaac
ggtggctcgctgaccattatcgcaaccgcactgattgacaccggttccaagatggatgaa
gtaatcttcgaagaattcaagggtacaggtaacatggaactccagctggaccgcaacttg
agcaacaaacgtatcttcccggcagtaaacatcgtggcatcaagcacccgccgcgacgac
ttgctgctcgacaagactactttggaccgtatgtggattcttcgcaagtatttggcagat
atgaatcctatcgaagccatggatttcgtaaagagtcgtttggaaaataccaaagacaac
gaagaattcctgatgagcatgaactcataa
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