Borrelia venezuelensis: bvRMA01_000378
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Entry
bvRMA01_000378 CDS
T08848
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bvw
Borrelia venezuelensis
Pathway
bvw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bvw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bvRMA01_000378 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvw03021
]
bvRMA01_000378 (rpoC)
03400 DNA repair and recombination proteins [BR:
bvw03400
]
bvRMA01_000378 (rpoC)
Enzymes [BR:
bvw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bvRMA01_000378 (rpoC)
Transcription machinery [BR:
bvw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bvRMA01_000378 (rpoC)
DNA repair and recombination proteins [BR:
bvw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bvRMA01_000378 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UPA12061
LinkDB
All DBs
Position
complement(397601..401734)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFEKIRIKIASPDQIRSWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGIICDRCNVEVTHFKVRRERMGHIELSAPVAHIWYYKYIPSRIGLLLDI
TASNLNSILYYEKYIVIEPGDTDLKKMQLLNEDEYSEAKERYGMSFSASMGAEAIKTLLE
NLDLDELSSKLRLQMIDKDDKTDKKLLRRLEIIENFKVSGNKPEWMIMDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGTSNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGIPAK
MALELFKPFVIRKLIESESVFNIKRAKSLIEQEVDEVWQILDNVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMERKNVVGEGRKFSNFNHVLLAINNKSLDYNARIYVK
VDGEYIETTAGCVVFNEALPDKISFVNKTLSDYELQNLISEVYVVYGSSIVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPEEKKVYVDKANREIAKIQNDYTKGVITGEERYNNVVSVW
SKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVEALKNGEEIVEPLREKAVGSYSIERIKSPITGEIILDVNEEITEDKIKLLETVGI
DKLVIRSVLTCEAEHGVCQKCYGRDFSNNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKIALKNSFILNGLEGFNVQVDGGLLFTRKGTLRVINVIYEEDIKDIKDF
KVLDSQKVIKGMPLFTSKDGIDVLSSHIGYVRIKDNKLMIVSEEQEISLKTGTKLEVNVG
DYVEAGRVIGTFDPFAEPIIAEVRGKVKFKDIILGTTLKEEINLETGNIEKRITDQVFES
LDPRILIINDRGIEIASYVLPGDAYLQVEDGQDIDIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGVVQFKAIQKGKRLINVLDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVSVGDTNFVYNQKVDKHTFYEQNKRVIEQGGEPAVASPILIGITKASLNIDSFISA
ASFQETTKVLTDASIAGSVDDLKGLKENVVIGHLIPTGTGMNLYKRVKVRENSSSEM
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaaagataagaataaagatagcatctcctgatcaaatt
aggagttggtcttatggagaggttaaaaaatctgaaactattaactatagaactttgaga
cctgagaaagatggtcttttttgcgagagaatttttggaactactaaagaatgggaatgt
tattgtggaaagtttaagtcaataaggtataagggtattatttgtgatcgttgtaatgtt
gaggtgactcattttaaagttaggcgtgagagaatggggcatattgaactctcagctcct
gttgctcatatctggtattataaatatattccttctagaattggtcttttacttgatatt
acggcttctaatttaaactctattctttattatgaaaagtatatcgtaattgagccaggt
gatactgatcttaaaaagatgcaacttttaaatgaagatgaatactctgaagcaaaagag
agatatgggatgtcttttagtgcttcaatgggtgctgaggccattaaaactttacttgag
aaccttgatcttgatgaactttcatctaagcttagacttcagatgattgataaagatgat
aagacagataaaaaacttttaagacgtcttgagatcattgaaaattttaaagtttctgga
aataagccagaatggatgattatggatgttcttcctgttattcctccagaaattagacca
atggttcagcttgatggtggaagatttgccacttctgatctcaatgatctctatagaaga
gtaataaatagaaataataggttaagaaaacttttgcttcttaatgcccctgagattatt
gtcagaaatgaaaaaagaatgttacaggaatcagttgattctctttttgataattctcat
aagagaaaggttgtgaagggtacatccaatagacctcttaaatctctctctgatgcacta
aagggtaaacaaggtagatttaggcaaaaccttcttggaaagagggttgattattcaggt
cgttctgtaattgttgtgggacctgaacttaagctacatcaatgtggtattcctgcaaag
atggcgcttgagctttttaagccatttgtaattagaaaattgattgagagtgaatccgta
tttaatataaagcgagcaaagagtctaattgaacaagaagtagatgaagtatggcagatt
ttagacaatgttattaaagagcatcctgtgcttttaaaccgggccccaacacttcacagg
ctgggaatacaagcttttgaaccagtgttagttgaagggaaggcaattaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggtgatcagatggctgtacatgttcct
ttaacacctgcagcacaggctgaaagttgggctttgatgttgtcaactaataatttgtta
aatcctgcaaacggacatcctattgtatttccatctcaagatattgtattaggtctttat
tacttaaccatggagaggaaaaatgtagtgggagaagggcgtaagttctctaatttcaat
catgttcttcttgcgattaataataaaagtctagactataatgcacggatttatgtaaag
gttgatggtgagtatatagaaactacggcgggatgtgttgtatttaatgaggctttacca
gataaaatttcatttgtaaataaaacccttagtgattatgagttacagaatttgatttct
gaagtttatgttgtgtatggttcctctattgtaattgaaatgttggatattattaaggag
cttgggtttaaatatgctactaaatttggatgtacaataagtatgagcgatattattgtg
cctgaagagaagaaagtatatgtggataaggctaatagagaaattgcaaaaattcagaat
gattatactaaaggtgttattactggagaagagagatacaacaatgttgtttctgtttgg
tcaaagacaaatgaagagcttaccaataagatgatggaaattcttaaaaaagatagagat
ggatttaatgtgatttatatgatggctgattctggtgctcgtggaagtagaaatcagata
agacagcttgcgggaatgagaggattgatggctaaaacctctggagatattattgaactt
ccaattatttctaattttaaagaagggctttctgttatagagttctttatctctacaaat
ggtgcaagaaagggacttgcagatacagctcttaagacagcggatgccggatatttaacg
cgaagattggtagatattgctcaggatgttgttgttagaatagaagattgtggaactatt
aatggtataaaagttgaggctttaaagaatggtgaagaaatagttgagcctttaagagaa
aaagctgttggtagttattcaattgagagaataaaaagtcctattacgggcgagattatt
ttagatgtaaatgaagaaattacagaggataagataaagttattggaaaccgttggtatt
gacaagcttgtaattagatctgttttgacctgcgaagctgagcatggagtttgtcaaaaa
tgttatggacgtgacttttcaaataataagcctgttaatattggagaagctgttgggata
atagcagctcagtcaataggtcagccaggaacacagcttaccatgagaacttttcacatt
gggggagttgcacaggctggtagtgaagatgataagattgcgcttaagaactcttttatt
cttaatggactagagggatttaatgtgcaagttgatggtggattgctttttacaagaaaa
ggaactttaagagtaataaatgttatttatgaagaagatattaaggatattaaagatttt
aaggtattagattctcaaaaggtaattaagggaatgcctttgtttacaagcaaggatggt
attgatgtattatcatctcatattggttatgttagaattaaagataacaagctgatgatt
gtctctgaagagcaagagatatctctcaagactggtacgaaacttgaggtaaatgtgggt
gattatgttgaggctgggcgtgtaattggaacatttgatccatttgcggaaccaattatt
gctgaagttaggggaaaagttaaatttaaagatattattttaggaacaactcttaaagaa
gaaataaaccttgaaacaggaaatattgaaaagagaattacggatcaagtttttgagtct
cttgatcctaggattttaattattaatgatagaggaattgagattgcatcttatgttctt
cctggagatgcttatctgcaagttgaggatggacaagacattgatataggggatatcatt
gctaaactttccaaaggttctgaaaaaactcaagatattactggtggtcttcctagggtt
aatgatttgtttgagacaagaattccaaagaatttgactgagatggctaaggtaagtgga
gttgttcagtttaaagcgattcaaaaaggtaaaagactcattaatgttttagatgagtat
ggagttgagcataagcattatattcctgctggaaaacatcttttagttagggatggagac
gttgttaaggctggagatatgctttgtgatggaagaattaatcctcatgatgttcttgaa
atccttggtggaattagtttgcaagaatttttattagcagaaattcaggatgtttatagg
aagcagggtgtaagtattaatgataagcatattggtgtgatcattaaacagatgatgaag
aaagttaagattgtgtctgtaggtgatactaattttgtttataatcaaaaggtggataag
catactttttatgagcaaaataaaagggtaattgaacagggtggtgagcctgcagtagct
agtccaatccttattgggataacaaaggcatctcttaatatcgattcatttatttcagct
gcttctttccaagaaacaactaaagtgttaacagatgcttcaattgcaggtagtgtcgat
gatcttaaaggtcttaaagaaaatgttgtgattggacatttaattcctaccggaacaggt
atgaatttatataaaagagttaaggtgagggaaaattcaagctctgaaatgtag
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