Candidatus Blochmannia vicinus (nom. nud.): M9408_01845
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Entry
M9408_01845 CDS
T08509
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bvx
Candidatus Blochmannia vicinus (nom. nud.)
Brite
KEGG Orthology (KO) [BR:
bvx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M9408_01845 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvx03021
]
M9408_01845 (rpoD)
Transcription machinery [BR:
bvx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M9408_01845 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
DUF2610
DNA_ligase_A_N
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
URJ32759
LinkDB
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Position
complement(440873..442729)
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AA seq
618 aa
AA seq
DB search
MEHNPQSQFKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMNDMGIQVMEEAP
NSDEFLLIEHTSSTNDEEDATEAAVQALANVDSELLGRTTDPVRMYMREMGTVELLTREG
EIDIAKRIEDGINQVQCSVAEYPEAITYLLDQYKRVETGETRLSDLITGFVDPNAADEEN
ISASAHTNITQNITSETVSEAISDDDEEENNDENNIDPDIARKKFIALRDQYEITRKSIK
YNGRNHAQSSKEILKLSEVFKQFRLVPKQFDNLVNNMRSMMERVRIQERLIMKLCVEISK
MPKKSFIELFSGNETNKAWFDTALSMNNTSWSETLHKVDEDVQHSLSKLHQIEKETGLTI
EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIG
HEPTPEELAERMLMSEDKIRKVLKIAKEPISMETPIGDDEDAHLGDFIEDTNLDLPLDSA
TSDNLRTATHDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEILRSFLDD
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaacataacccacaatcacaatttaaattactcgtcacacttgggaaagaacaagga
tatttaactttttctgaagtcaacgatcatttaccagaagatattgtggatccaggtcaa
attgaaaatataatccaaatgatgaatgatatgggtattcaagtcatggaagaagcgcct
aattccgatgaatttttgttaattgaacacactagttcaactaatgatgaagaagatgca
acagaagcagctgtgcaggcgttagctaatgttgattcagagttgttaggtagaacaact
gatccagtacgaatgtatatgcgagaaatgggcactgtagaattattaacacgagaaggc
gaaatagatatcgctaaaagaatcgaagatggaataaatcaagtgcaatgctcagttgct
gaatatccagaagcaattacttatttgctggaccaatataaacgcgtagaaaccggagaa
acacgcctttcagatttaattacaggtttcgtggatcctaacgccgcagatgaagaaaac
atatcagcatcagcacacacaaatataactcaaaatataacttctgagactgtttctgaa
gcaatatctgatgacgatgaagaagaaaataatgatgaaaataacattgatccagacata
gctcgtaaaaaatttatagcgctacgtgatcaatatgaaataactcgaaaatcaataaaa
tataatggacgcaatcatgctcaatcatcaaaagaaatcttaaagctttccgaagtattt
aaacaatttagattagttccaaaacaatttgataatttagttaataatatgcgctctatg
atggaacgagtacgcatacaagaacgtttgattatgaaattatgtgttgaaattagtaaa
atgcctaagaaaagtttcatagagttattttcaggaaatgaaactaataaagcttggttt
gatacagctttatctatgaacaacacgtcatggtcggaaacattacataaagttgatgag
gatgtacaacatagtttatcaaaactacaccaaattgaaaaagaaacaggactaacaata
gaacaagtgaaagatattaatcgtcgtatgtcgattggggaagctaaagctcgcagagct
aaaaaagaaatggttgaagctaatcttcgcttagtcatatctattgctaaaaaatataca
aatagagggttacaatttttagatttgatacaagaaggtaatattggtttgatgaaagct
gtagataaatttgagtatcgtcgtggttataaattttctacttatgctacttggtggatt
cgccaagcaattactagatcaatagcagaccaagcacgtactattagaattccagttcat
atgatagaaactattaataaacttaatagagtttctcggcaaatgctacaagaaatagga
catgaaccaacaccagaagaattagcagagcgcatgcttatgtcagaagataaaatcaga
aaagtattaaaaatcgcgaaagaacctatttccatggaaactcctataggagacgatgaa
gatgctcatcttggtgattttattgaagatacgaatcttgatttacctttagactcagca
acttcagataatttacgtactgctacccatgatgtacttgctggattaactccaagagaa
gctaaagtattacgcatgcggtttggtattgatatgaatactgatcatactttagaagaa
gtgggaaaacaatttgacgtaactcgggaacgtatccgtcaaatagaggcaaaagcttta
agaaaattacgtcatcctagccgttctgaaatattacgcagctttttagatgattaa
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