Brevundimonas vancanneytii: NCTC9239_01066
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Entry
NCTC9239_01066 CDS
T06708
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC9239_01066 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvy03021
]
NCTC9239_01066 (rpoB)
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_01066 (rpoB)
Enzymes [BR:
bvy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC9239_01066 (rpoB)
Transcription machinery [BR:
bvy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC9239_01066 (rpoB)
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC9239_01066 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Bap31_Bap29_C
Motif
Other DBs
NCBI-ProteinID:
VTO13475
UniProt:
A0A4P1JZC8
LinkDB
All DBs
Position
1:1059733..1063848
Genome browser
AA seq
1371 aa
AA seq
DB search
MAKSTDGLALGKIAAATSFTGKKRIRYSFGRIPEAVQMPNLIEVQRASYEQFLQRESRPG
LRNDEGIEAVFKSVFPIKDFNERAVLEYVSYEFEDPKYDVEECIQRDMTYAAPLKVKLRL
IVFETEEETGARSVKDIKEQDVYMGDIPLMTGKGTFIVNGTERVIVSQMHRSPGVFFDHD
KGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPASTFLYALGMDGEEI
LKTFYETVPYEKRGEGWVTPYKPERWRGVKPEFDLVDADTGEVVAPAGQKISARAAKKLA
DGGLKSLSLAADALLTKYLAADAVNYQTGEIYAEAGDELDAAAIELLEANGFTTIDVLDI
DHVTVGAYMRNTLRVDKNTGREDALFDVYRVMRPGEPPTPEAAEAMFNSLFFDAERYDLS
AVGRVKMNMRLETPEVSDEIRVLQKDDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVG
ELLENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQ
TNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLAT
HARVNKYGFIESPYRRVVEGKATDEVVYISAMEEAKHVIAQANIDLKDGEIVEELVPGRI
NGDSQLLTKETVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAP
LVGTGMEAVVAVDSGAVVIARRDGVVEQIDGTRIVVRATGDVDAGRSGVDIYRLSKFQRS
NQSTCINQRPIVRVGDEVKTGDVIADGPSTDLGELALGRNVLVAYMPWNGYNFEDSILIS
ERIVRDDIFTSIHLEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQP
GDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGI
DKDERAVAIERAEIERLGKDRDDELKILERNVYGRVKPLLLGKTAVSGPKGMGRGEVTEE
KLAEVSKGLWWQVALDDEKAMGELEAMKKQFEDARKALDRRFEDKVEKLQRGDEMPPGVM
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLDDGTHVDIVLNPLGVPSRM
NIGQIFETHLGWAAAGLGKQIKGLLEQWMDGGMRDALVSRLTQIYGADTPLPQSDEELIE
LAQNLSKGVPFATPVFDGARISDIEDLLESADLDRSGQSILFDGQTGEQFKRPVTVGYVY
MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML
TVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLVKEMRSLGLNVELENS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtccaccgacggtctcgccttgggtaagatcgctgccgccacgtcgtttacc
ggcaagaagcgcattcgctacagcttcgggcgcatccccgaagccgtgcagatgccgaac
ctgatcgaggttcagcgcgcttcctatgagcagttcctgcagcgcgagtcgcgccccggt
ctgcgcaacgacgagggcattgaagcggtcttcaagtcggtcttcccgatcaaggacttc
aacgagcgcgccgtcctggaatacgtctcctacgagtttgaagacccgaagtacgacgtc
gaggaatgcatccagcgcgacatgacctatgccgcgccgctgaaggtcaagctgcgcctg
atcgtctttgagaccgaggaagaaacgggcgcccgttcggtcaaggacatcaaggagcag
gacgtctacatgggcgacattccgctcatgacgggcaagggcacattcatcgtcaacggc
accgagcgcgtgatcgtctcgcagatgcaccgctcgccgggcgtcttcttcgaccacgac
aagggcaagacccactcgtcgggcaagctgctgttcgccgcccgcgtcatcccgtatcgc
ggctcgtggctggacttcgagttcgacgccaaggacatcgtctacgtccgcatcgaccgc
cgtcgtaaactgccggcctcgaccttcctctatgccctgggcatggacggggaagagatc
ctcaaaaccttctacgagaccgttccgtacgagaagcgcggcgaaggctgggtcacgccc
tacaagccggaacgctggcgcggcgtgaagccggagttcgatctggtcgacgccgacact
ggcgaagtggtcgccccggctggtcagaagatcagcgcccgcgccgccaagaagctggcc
gacggcggtctgaagtcgctgtcgctggcggctgacgccctgctgaccaagtatctggcc
gctgacgccgtcaactaccagaccggcgaaatctacgccgaggcgggtgacgagctggac
gccgccgcgatcgaactgctggaagccaacggcttcaccaccatcgacgtgctggacatc
gaccacgtcacggtcggcgcctacatgcgcaacaccctgcgtgtggacaagaacacgggc
cgcgaggacgccctgttcgacgtctatcgcgtcatgcgcccgggcgagccgccgacgccg
gaagcggccgaggccatgttcaactccctgttcttcgacgccgagcgctacgacctgtcg
gccgtgggccgcgtcaagatgaacatgcgtctggaaacccctgaggtttcggacgaaatc
cgcgtcctgcagaaggacgacgtgctgaaggtgctgcagatcctggttggcctgaaggac
ggccgcggcgagatcgacgacatcgacaacctgggcaaccgccgggtccgttcggtcggc
gagttgctggaaaaccagtaccgcgtcggtctgctgcgcatggagcgcgccatcaaggag
cgtatgtcctcggtcgatatcgacacggtcatgccgcacgacctgatcaacgccaagccg
gccgctgcggctgtgcgtgaattcttcggctcgtcgcagctgtcgcagttcatggaccag
accaacccgctgtcggaaatcacccacaagcgtcgcctttcggcgcttggcccgggcggt
ctgacgcgcgagcgcgccggctttgaagtccgcgacgttcacccgacgcactacggccgc
atctgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactccctggccacg
cacgctcgcgtgaacaagtacggcttcatcgaaagcccgtaccgtcgcgtggtcgaaggc
aaggcgacggacgaggtggtctacatctcggccatggaagaggcgaagcacgtcatcgcc
caggccaacatcgacctgaaggacggcgagatcgtcgaggagctggtgccgggccgtatc
aacggcgactcgcagctgctgaccaaggaaacggtcgacatgatggacgtgtcgccgaaa
caggtcgtttcggtcgccgccgccctgatccccttcctggaaaacgacgacgccaaccgc
gcgctgatgggcgccaacatgcaacgtcaggccgtgccgctggtgcagtcggacgcgccg
ctggtcggcaccggcatggaagcggtcgtggccgtggactccggcgcggtcgtgatcgcc
cgtcgtgacggcgtggtcgaacagatcgacggcacccgcatcgtggttcgcgccacgggc
gacgtggacgccggtcgttcgggcgtcgacatctatcgcctgtcgaagttccagcgctcg
aaccagtcgacctgcatcaaccagcgcccgatcgtgcgcgtgggcgacgaagtgaagacc
ggcgacgtgatcgccgacggtccgtcgacggatctgggcgaactggctctgggccgcaac
gtcctggtcgcctacatgccctggaacggctacaacttcgaagactccatcctgatctcc
gagcgcatcgtgcgcgacgacatcttcacctccatccacctcgaagagttcgaagtgatg
gcgcgtgataccaagctgggtccggaagaaatcacccgcgacatcccgaacgtcggcgag
gaggccctgcgcaacctcgacgaggcgggcatcgtggccatcggcgccgaggtccagccg
ggcgacatcctggtcggcaaggtgacgccgaagggcgaaagcccgatgaccccggaagag
aagctgctgcgcgccatcttcggcgagaaggcttcggacgtgcgcgacacctcgctgcgt
ctgccgccgggcgtcgccggcaccatcgtcgacgtgcgcgtgttcaaccgtcacggcatc
gacaaggacgagcgcgccgtggccatcgaacgcgccgagatcgagcgtctgggcaaggac
cgcgacgacgagctcaagatccttgagcgcaacgtctacggccgcgtgaagccgctgctg
ctcggcaagaccgccgtgtccggcccgaagggcatgggccgcggcgaggtcaccgaagag
aagctggccgaagtgtccaagggcctgtggtggcaggtcgccctcgacgacgagaaggcg
atgggcgagctggaggccatgaagaagcagttcgaggacgcccgtaaggccctcgaccgc
cgcttcgaagacaaggttgagaagctgcagcgcggcgacgagatgccgcccggcgtcatg
aagatggtcaaggtcttcgtggccgtgaagcgcaaactgcagccgggcgacaagatggcc
ggccgtcacggcaacaagggcgtcatctccaagatcctgccgatcgaggacatgccgcac
ctggacgacggcacccacgtcgacatcgttctgaacccgctgggcgtgccgtcgcgcatg
aacatcggccagatcttcgaaacccacctgggttgggcagccgctggcctgggcaagcag
atcaagggcttgctcgagcagtggatggacggcggcatgcgcgacgccctggtgtcgcgt
ctgactcagatctacggcgccgacaccccgctgccgcagagcgacgaagagctgatcgaa
ctggcccagaacctgtccaagggcgttccgttcgcgactccggtcttcgacggcgcgcgc
atctcggacatcgaggatctgctggaatcggcggacctggatcgttcgggtcagtcgatc
ctgttcgacggccagacgggcgagcagttcaagcgtccggtcacggtcggctatgtgtac
atgctgaagctgcaccacctggtcgacgacaagatccacgcccgctcgatcggcccgtac
tcgctcgtcacccagcagccgctgggcggtaaggcgcagttcggcggtcagcgcttcggg
gaaatggaggtctgggctctggaagcttacggcgccgcctacaccctgcaggaaatgctg
acggtgaagtcggacgacgtagccggccggaccaaggtctacgaggccattgtccgcggc
gacgacagcttcgaggccggcatccccgagtccttcaacgtgctggtgaaggaaatgcgc
tcgctgggtctgaacgtggagctggaaaacagctga
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