Brevundimonas vancanneytii: NCTC9239_01161
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Entry
NCTC9239_01161 CDS
T06708
Symbol
rnd_1
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bvy
Brevundimonas vancanneytii
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bvy03016
]
NCTC9239_01161 (rnd_1)
Enzymes [BR:
bvy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC9239_01161 (rnd_1)
Transfer RNA biogenesis [BR:
bvy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC9239_01161 (rnd_1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Thioredoxin_15
Motif
Other DBs
NCBI-ProteinID:
VTO13759
UniProt:
A0A4P1K2X6
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All DBs
Position
1:1158405..1159559
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AA seq
384 aa
AA seq
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MTPITTNDALIAFCERLAKAPYITVDTEFMRETTYWPKLCLIQAAASPTDAAIIDPMAEG
LDLEPFLDILRDESILKVFHAARQDVEIFNKLGAMPRPLFDTQVAAMAAGFGDQVSYEAL
VRQMLRQELDKGSRFTDWARRPLSDAQLTYALGDVTHLSALYPKLRDRLQKEGRLDWVMS
EMGAVTDPALYDTSPENAWKRLKPKKFNAKYLAAFVAVAVWRERAAQERDQPRGRILKDE
AIDEIAVQAPTDPDAFNRLRSVPKGFGGSRLGLELAAELKRVLADPEAHAPKLERPAHNQ
PAPPSVVELLKVLLKAKSDNAGVASKLIATVSDLEKIALNDNADVEAMKGWRRQLFGEDA
LKLKKGEIALVLNGARVEVVEIEG
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgacgccaatcaccaccaatgacgcgctgatcgccttctgcgagcgtttggccaaggcc
ccgtacatcaccgttgatacggaattcatgcgggaaacgacctactggcccaagctgtgc
ctgattcaggcggcggcttcgccaacggacgccgccatcatcgatccgatggcggagggg
ctggatctggagcctttcctcgacatcctgcgggacgaatcgattctgaaggtcttccac
gcggcccggcaggacgtggagattttcaacaagctgggcgccatgccgcgcccgctgttc
gacacccaggtcgccgccatggccgccggcttcggcgatcaggtcagctatgaggctctg
gtccgtcagatgctgcgtcaggagctggacaagggcagccgcttcaccgactgggcgcgt
cgcccgctgtcggacgcgcagctgacctatgccctgggcgacgtgacgcacctgtcggcc
ctctatcccaagctgcgcgatcggctgcagaaggagggccgtctggactgggtcatgtcg
gaaatgggcgcggtcacggacccggccctctacgacacctcgcccgagaacgcctggaag
cggctgaagcccaagaagttcaacgccaaatatctggccgccttcgtcgctgtcgccgtc
tggcgcgagcgcgcggcccaggagcgcgatcaaccgcgcggccgcatcctgaaggacgag
gccatcgacgagatcgccgtccaggcgccgaccgaccccgacgccttcaaccgcctgcgt
tcggtgcccaagggcttcggcggctcgcgcctggggctggagctggcggccgagctgaag
cgcgttttggccgacccggaagcccacgcgcccaagctggagcgcccggcgcacaaccag
ccggcgccgccttcggtggtggaactgctgaaggtgctgctgaaggccaagagcgacaac
gcgggcgtggcgtcaaagctgatcgccaccgtgtcggacctggagaagatcgctctgaac
gacaacgccgacgtcgaagccatgaagggctggcgccgtcagctgttcggcgaggacgcg
ctgaagctcaagaaaggcgagatcgccctggtgctgaacggcgcccgcgtcgaagtggtc
gagatcgagggctga
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