Brevundimonas vancanneytii: NCTC9239_01182
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Entry
NCTC9239_01182 CDS
T06708
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC9239_01182 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvy03019
]
NCTC9239_01182 (rne)
03009 Ribosome biogenesis [BR:
bvy03009
]
NCTC9239_01182 (rne)
Enzymes [BR:
bvy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC9239_01182 (rne)
Messenger RNA biogenesis [BR:
bvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC9239_01182 (rne)
Ribosome biogenesis [BR:
bvy03009
]
Prokaryotic type
rRNA processing factors
NCTC9239_01182 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
VTO13822
UniProt:
A0A4P1K0S0
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All DBs
Position
1:complement(1180482..1183169)
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AA seq
895 aa
AA seq
DB search
MSKTMLIDAAHAEETRVAIVDGRQVEEFDFESRARRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPVADREAIMAEAHDDADEDDLGRESDDADSDGKLADEER
LKRRLMRRYKIQDVIKRRQILLVQVVKDERGAKGAALTTWLSLAGRYCVLMPNTGKGGGI
SRKITNTSDRRRLKSAAAALKVPQGMGLIIRTAGAKRTRAEIKRDYEYLLRLWETIRELT
LRSNAPAMIHEEENLVRRAVRDMYDKDFDGIQVEGVEGFKQARDFMRVLMPSQAKKIHLY
QGSRPLFAANGIEEVLTQIHQPVVPLKSGGYLVINQTEALVAIDVNSGRATKERNVEATA
TKTNLEAAVEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKALKDALAKDRARIQMGRI
SGFGLMEISRQRRRLGVIEGATEVCECCQGAGRVRSAESAALTTLRAVDIEAGKNGAGSV
NLRVSTAVALYILNHKRAYLQFLLEERGLNVIIQIDDSLAQGEHSIERTETNEDFVAPES
HIDLADLDDGFDDSAYDDEDEDAEDEDDFGDDEDEADLDREDEDDDEARARSEQDDDSRG
GRRRRRRGGRRDEETEAAASDDDDDSRGGRRRRGRRGGRRMREEGERDVYAWVRGRTPSL
QDPYVWFDPINPVAPRPERKDERRPEAAGEDTAQDVGLDQVAASEEGRNGRSRRRRGRGR
GRGQGELTHETKVEDRAANEGLPPVGSPDTPIAVVIEGEATEAPAAEAAPAVEQAEAPKR
RRVRRKVSAAAAEDATAAAAVEAEAAPVEADQPVPAELDVPPAVAARVEQAIEEALEEAL
GEIPAVAESVVEEAVVLADPVPAPTAEVDIAAIIADDPNQIGAPPAKPKRGWWRR
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaccatgttgatagacgcggcgcacgcggaagaaacccgcgtcgcgatcgtg
gacggccgccaggttgaggaattcgatttcgaatcccgcgcccgccgtcagcttcggggg
aacatctatctcgccaaggtcacccgcgtagagcccagcctgcaggcggccttcgtcgag
tacggcggaaaccgccacggcttcctggccttcaacgaaatccacccggattattatcag
atccccgtcgccgaccgcgaagccatcatggccgaagcgcacgacgacgcggacgaagac
gacctgggccgtgaatccgacgacgccgattccgacggcaagctggccgacgaggaacgc
ctgaagcgtcgcctgatgcgtcgctacaagatccaggacgtcatcaagcgccgccagatc
ctgctggtgcaggtcgtgaaggacgagcgcggcgccaagggcgcggccctgaccacctgg
ctgtcgctggccggccgttactgcgtgctgatgccgaacaccggcaagggcgggggcatt
tcgcgcaagatcaccaacacctcggaccgtcgccggctgaagtccgccgccgccgcgctg
aaggtgccgcagggcatgggcctgatcatccgcacggcgggcgccaagcgcacgcgggcc
gagatcaagcgcgactatgaatatctgctgcgcctgtgggagacgatccgcgaactgacc
ctgcgctccaacgcgccggcgatgatccacgaggaagagaacctggtccgccgcgccgtg
cgcgacatgtacgacaaggacttcgacggcattcaggtcgagggcgtcgaaggcttcaag
caggcccgcgacttcatgcgcgtgttgatgccgtcgcaggccaagaagatccacctctac
cagggctcgcgcccgctgttcgcggcgaacggcatcgaagaggtgctgacccagattcac
cagccggtcgtgccgctgaagtcgggcggctatctggtcatcaaccaaaccgaagccctg
gtcgccatcgacgtgaactccggccgcgccaccaaggagcgcaacgtcgaggccacggcc
accaagaccaacctggaagccgccgtcgaggccgcccgccagctgcgcctgcgcgacctg
gccggtctgatcgtcatcgacttcatcgacatggacgagggcaagaacaaccgcgcggtt
gagaaggccctcaaggacgccctggccaaggaccgcgcccgcatccaaatgggccgcata
tcgggcttcggcctgatggagatcagccgtcagcgtcgccgcctgggcgtgatcgagggc
gcgaccgaggtctgcgaatgctgccagggcgccgggcgcgtccgctcggccgaatcggcg
gctctgaccaccctgcgcgccgtcgacatcgaggccggcaagaacggcgcgggttcggtg
aacctgcgcgtctcgaccgccgtggcgctgtacatcctgaaccacaagcgggcctacctg
cagttcctgctggaagagcgcggcctgaacgtcatcatccagatcgacgacagcctggct
cagggcgagcactcgatcgagcgcaccgagacgaacgaggacttcgtcgcccccgaaagc
cacatcgatctggccgacctggacgacggcttcgacgacagcgcctatgacgacgaggac
gaagacgccgaggacgaagacgatttcggcgacgacgaagacgaggccgatctcgaccgc
gaggacgaggacgacgacgaggcccgcgcccgctccgaacaggacgacgacagccgcggc
ggacgccgccgtcgccgtcgcggcggtcgccgtgacgaagaaaccgaagccgccgcttcc
gacgatgacgacgacagccggggcggccgccgccgccggggccgtcgcggcggtcgccgg
atgcgcgaggaaggcgaacgcgacgtctacgcctgggtgcgcggccgcacgccgtcgctg
caggatccttacgtctggttcgacccgatcaacccggtcgcccctcgtcccgaacgcaag
gacgagcgcaggccggaggccgccggcgaggatacggctcaggacgtcggcctggaccag
gtcgccgcttcggaagaaggccgcaacggccgctcgcgccgtcgtcgcggccgcggccgg
ggtcgcggtcagggcgaactgacccacgaaaccaaggtcgaagaccgcgccgccaatgaa
ggcctgccgcccgtcggctcgcccgacacgccgatcgccgtggtgatcgaaggcgaagcg
accgaggcgcccgccgccgaggccgctccggccgtcgaacaggccgaagcgcccaagcgc
cgccgcgtgcgccgcaaggtcagcgccgccgccgcggaagacgcgacggcagcggccgcg
gttgaggccgaggccgcgccggtcgaagccgaccagcccgtccccgccgaactggacgtg
ccgcccgccgtggccgcccgcgtcgaacaggcgatcgaagaagccctcgaagaggctctg
ggcgagatcccggccgtcgccgagagcgtggtcgaagaggctgtcgtcctggccgatccg
gtcccggcgccgacggccgaggtcgacatcgcggccatcatcgccgacgatccgaaccag
atcggcgcgccgcccgccaagcccaagcggggctggtggcgccgttga
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