Brevundimonas vancanneytii: NCTC9239_01229
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Entry
NCTC9239_01229 CDS
T06708
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03410
Base excision repair
bvy03430
Mismatch repair
bvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC9239_01229 (recJ)
03430 Mismatch repair
NCTC9239_01229 (recJ)
03440 Homologous recombination
NCTC9239_01229 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_01229 (recJ)
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NCTC9239_01229 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCTC9239_01229 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC9239_01229 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
TBX2-3_RD
Motif
Other DBs
NCBI-ProteinID:
VTO13960
UniProt:
A0A4P1K0R3
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All DBs
Position
1:1224057..1225859
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AA seq
600 aa
AA seq
DB search
MADGAVSPAFLDVSRSLSGRAWRLRPAEAGVTRAHIQALGLDEPLARALASRGVAAEQGA
DFLKPTLKALFPNPSSFMDMDAAAAAIVDALQAQASIHVFADYDVDGASSAALLVRWFRT
LGADLPIYVPDRLTEGYGPSARAFDTLKARGADLVITVDCGAAANEAVAHAAAIGLRVVV
IDHHMMREEPPACLAVVNPNRPGCGSGQGNLAAAGVVFVLLAALNREARGRGLFEGKAEP
DIRQWLDLAAMGAICDVTGLTGFNRALTSLGLGVMSHWRNPGLRALLAAAGAEPGPAKTN
HAGFILGPRINAGGRIGKSDLGARLLSTDDPDEARMLAQELDALNLARREVEAEVTEQAV
RRVEATGAHADDSAVVVVSGEDWHPGVVGIVAGRLRERCRKPVIVIGVDAVNGVGKGSGR
SQPGMNLGRAVQAAWNEGLLIAGGGHAMAAGLTVAADRIDELRAFLNERLSTERVEAVAQ
DWVEVDALIDPRAATRDLFEAFEQLAPYGPANPEPLFALEGVQAREPVAMNGGHVRCRLV
GPDGASVRAIAWRCADLPTGKALLAGQGGLNVVGRLRADDWNGRRGVQFEIEDVADPRMA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcgccgtctcgcccgccttcctcgacgtatcccgatccctgtcgggccga
gcctggcggctgcgcccggccgaggcgggcgtgacgcgggcgcatatccaggcgttgggt
ctggacgagccgctggcgcgtgcgctggcgtcgcgcggagtggcggcggaacagggcgcc
gacttcctgaaacccacgctcaaggcgctgttccccaatccgtccagcttcatggacatg
gacgccgccgccgccgccatcgtcgacgcgcttcaggcgcaggccagcatccacgtcttc
gccgactacgacgtggacggggcgtccagcgcggccctgctggtgcggtggttccgcacc
ctgggcgcggacctgcccatctatgtccccgaccgcctgaccgagggctacggccccagc
gcgcgggccttcgatacgctgaaggcgcgcggcgccgatctggtcatcaccgtcgactgc
ggcgcggcggccaatgaggcggtggcccacgcagcggccatcggcctgagggtcgtcgtc
atcgaccaccatatgatgcgtgaagagccgcccgcctgcctcgccgtagtcaatcccaac
cggccgggctgcggctcggggcagggcaatctggcggcggcgggggtggtcttcgtcctg
ctggccgccctgaaccgcgaggcccgcgggcgcggcctgttcgagggcaaggccgagccg
gacattcgccagtggctggatctggccgccatgggcgccatctgcgacgtgacgggcctg
accggcttcaaccgcgccctgaccagtctggggctgggggtcatgtcgcactggcgcaat
ccgggcctgcgcgccctgctggcggcggcgggcgccgagccgggaccggccaagaccaat
catgcgggcttcatcctcggcccgcgcatcaatgcgggcggccgtatcggcaagtccgac
ctgggcgcgcgcctgctgtccaccgacgaccctgatgaagcgcggatgctggcgcaggaa
ctggacgccctgaacctcgcccggcgcgaggtcgaggctgaagtcaccgaacaggccgtc
cgtcgcgtcgaggcgaccggcgcccacgccgacgacagcgccgtcgtggtcgtcagcggc
gaggactggcaccccggcgtggtcggcatcgtcgccggacgcctgcgcgaacgctgtaga
aaacccgtcatcgtcatcggcgtcgacgccgtcaacggcgtcggtaagggctcaggccgt
tcgcagcccggcatgaatctgggccgggcggtgcaggcggcgtggaatgagggcctgttg
atcgcgggcggcggacacgccatggctgcggggttgactgtggcggcggatcgcatcgac
gaactgcgcgccttcctcaacgagcgcctgtcgaccgagcgcgtcgaggccgtggcccag
gattgggtcgaggtcgacgccctgatcgacccgcgcgccgccacccgcgatctgttcgag
gcgttcgagcaactggccccctacggccccgccaacccggagcctctgttcgcgctggaa
ggggttcaggcgcgcgagccggtcgccatgaacggcggccatgtgcggtgccgcctggtg
ggccctgacggcgcctcggtgcgggccatcgcctggcgctgcgccgacctgccgacgggc
aaggcgctgctggcggggcaggggggattgaacgtggtcgggcggcttcgggcggatgac
tggaacggccgtcgcggcgtgcagttcgagatcgaggacgtcgccgacccgcgcatggcc
tga
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