Brevundimonas vancanneytii: NCTC9239_01448
Help
Entry
NCTC9239_01448 CDS
T06708
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bvy
Brevundimonas vancanneytii
Pathway
bvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC9239_01448 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvy03400
]
NCTC9239_01448 (mfd)
Enzymes [BR:
bvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC9239_01448 (mfd)
DNA repair and recombination proteins [BR:
bvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC9239_01448 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
VTO14594
UniProt:
A0A4P1K3G8
LinkDB
All DBs
Position
1:1411585..1415034
Genome browser
AA seq
1149 aa
AA seq
DB search
MDAALARTDAELGGAPEGLDALIVAERIKAQGGTALFIARDYQRTGNFIQAFRFFAKDIE
VLEYPSWDCLPYDRLSPTASVAAQRMATLTRLATRDPSDRTPLLVVATVAAAAQRTPPRS
AVTGAGFAAKVGADLDTAALERYVAANGYVRASTVSERGEYAIRGGVIDVFPPGFEEPVR
LDMFGSELESIRAFDPETQRSTRQLKAVSLSPVSEVLMDADSISRFRSGYLNLFGAPGDE
PMYAAVSEGARRQGVEHWLPLFYDRLDTLFDYLPDAAPVFLDSQTEQARAERWNLTVDAY
EARKEAARGKGGAAYRALPPARLYLDDGDWNSALAGRAVRRLSPLVAGSSEDAGGRLGRS
FAAERSQDSVNLFAAVAQHAEALKGQGKRVLFASWSEGSAERLTAMLGDHGLTHVVAVRD
WDDVQGAPDGIYLRAVLPVEHGFVTDDLAVISETDILGDRLARPKRKRRASNFLAEASAL
TAGDLVVHLDHGIGRYEGLRTLEIQEAPHDCLELLYAGESKLYLPVENIDLLTRYGTDAE
GVQLDRLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRVSDAITPPAGLFDEFCARFP
YEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVCPT
TLLARQHFKTFSERFAGWPIKVRHLSRMVTAKDANETRAGLKDGSFEIVVGTHAVLADQV
GFKDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIAT
PPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPDIERFLREQVPEVKF
VVGHGQMSPTQLEAVMSAFYDGEYDVLVSTTIVESGIDIPTANTLVVHRADMFGLAQLHQ
IRGRIGRSKARAFAYLTTDPTKPLSLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNL
LGDEQSGHIREVGVELYQQMLEDAVAELREQGEAAPDRGWSPSINVGAAVLIPEDYVPDL
NVRLSLYRRLSDAEKMEDREAMAAELIDRFGPLPDEAQQLLRIVGIKANCRTAMIEKIDI
GPKGAVLTLRNNTFPNPMGLVGLIQKNHAFWKIRPDQKIVVKGDWPTPEDRLKVAERITA
DLARVAGAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcgctggcgcggactgacgcagaactgggcggcgcgccggaagggctggac
gccctgatcgtcgccgagcggatcaaggcccagggcgggaccgctttgtttatcgcgcgc
gattatcagcgcacaggaaatttcatccaggcattccgcttcttcgccaaggatattgaa
gttcttgaatatccttcgtgggattgcctgccttacgaccggctcagtccgacggcctcg
gtcgccgcccagcgcatggcgactctgacccggttggcgacccgcgatccgtcagaccgg
accccgctgctggtggtcgccacggttgcggccgccgcccagcgcacgccgcctcgcagc
gccgtgaccggcgcgggtttcgcggccaaggtcggcgcagatctcgatacggccgccctc
gagcgctacgttgcggccaacggctatgtacgcgcttccaccgtgtcggagcgcggcgaa
tacgccattcgcggcggggtgatcgatgtcttcccgccgggattcgaggagccggtgcgc
ctcgacatgttcgggtctgagctggaatcgatccgcgccttcgaccccgagacccagcgt
tcgacgcgccagttgaaggccgtctctctatcgcccgtgtccgaagtgctgatggatgca
gattcgatctcgcgcttccgcagcgggtatctgaacctgttcggcgcgccgggcgatgag
ccgatgtacgccgccgtcagcgagggcgcgcgccgtcagggcgtcgagcactggctgccg
ctgttctacgaccggctggatacgctgttcgactatctgccggatgcggcgccggtcttt
ctcgacagccagacggagcaggcgcgtgcggagcgctggaacctgaccgtcgacgcctat
gaggcgcgcaaggaagctgcgcgcggcaagggcggagcggcctatcgcgcgctgccgccc
gcgcggctctatctggatgacggcgactggaacagcgccctggccggccgcgccgtgcgc
cgcctgtcgcccctggttgccggttccagcgaagacgcaggcggtcgactaggccgcagc
ttcgccgccgagcggtcgcaggatagcgtcaacctgttcgccgccgtcgctcagcacgcc
gaggcgctgaaggggcagggcaagcgcgtcctgttcgcttcatggtccgaaggctcggcc
gaacgcctaaccgccatgctgggcgatcacggcctgacgcacgtcgtggcggtgcgcgac
tgggatgatgtgcagggcgcgccggacggcatctatctgcgcgcggtgctgccggtcgag
catggcttcgtcactgacgatctggccgtcatctccgagaccgacattctgggcgaccgc
ctagcacggcctaagcgcaagcggcgggcgtccaacttcctggccgaggcttcggccctg
acggcgggcgatctggtggttcacctggatcacggcatcggccgctatgagggcctgcgg
acgctggagatccaggaggcgccgcacgactgcctcgaactcctctatgcgggtgagagc
aagctctacctgccggttgaaaacattgaccttctgacccgctacggcacggacgccgaa
ggggttcagctggaccgtctgggcggcgcgggctggcaggcgcgcaaggccaaggccaaa
gagcgcctgcgcgccatggctgaggggcttatcgccctggccgccaagcgggcgctgcgc
gtgtccgacgccatcacgccgcccgccggcctgttcgacgagttctgcgcccgcttcccg
tatgaggagacggacgaccagttgaacgccatcggcgacgtgctggaagatctgggcaag
ggcacgccgatggatcgcctgatctgcggcgatgtcggcttcggcaagaccgaagtggcc
ctgcgcgccgccttcgtggtggccatgaccggccaacaggtcgccatcgtctgcccgacg
accctgctggcgcgtcagcacttcaagaccttcagcgaacgcttcgccggctggccgatc
aaggtgcgccacctgtcgcgtatggtcacggccaaggacgcgaacgagactcgcgcgggc
ctgaaggacggcagtttcgagatcgtcgtcggcacccacgcggttctggccgatcaggtc
ggcttcaaggatctgggcctcgtcatcgtcgacgaggagcagcacttcggcgtcaagcac
aaggagaagctgaagtccctgcgggccgatgttcacctgctgaccctgacagccacgccg
atcccgcgcacgctgcagatggcgctgtcgggcatccgcgagatgtcgatcatcgccacc
ccgccggtcgatcgtctggctgtgcggacctatgtcacgccgtgggatccggtgctggtg
cgcgaggccctgctgcgcgagaagtatcgcggcggtcaggcctattacgtcgcgccgcgc
ctgaaggatctgcccgacatcgagcggttcctgcgcgaacaggtgcccgaggtgaagttc
gtcgtcggccacggccagatgagcccgacccaactggaagcggtcatgagcgccttctat
gatggcgaatatgacgtgctggtctcgaccaccatcgtcgagagcggcatcgacattccg
acagccaatacgcttgtcgtgcatcgcgcggacatgttcggactggcccaacttcaccag
atcaggggccggatcggccggtccaaggcgcgggccttcgcctatctgacgaccgacccg
accaagccgctgagcctgtcggctgagcggcgtctgcaggtgctgcagtcgctggacaat
ctgggcgcgggtttccaactggccagccacgatctggaccagcgcggcggaggcaacctg
ctgggcgacgaacagtcgggccatatccgcgaggtcggcgtcgaactgtatcagcagatg
ctggaagacgccgtcgccgaactgcgcgagcagggcgaggcggcgccggatcgcggctgg
tcgccttcgatcaatgtcggcgcggccgtattgattccagaggattacgtcccggacctg
aacgtccgcctgagcctgtatcgccgcctgtccgacgccgagaagatggaggaccgcgag
gccatggccgccgaactgatcgaccggttcggcccgctgccggacgaggcgcagcagctt
ctgcggatcgtggggatcaaggccaactgccgcacggccatgatcgagaagatcgacatc
gggcccaagggcgcggtgctgactctgcgcaacaacaccttccccaacccgatgggactg
gtgggtctgatccagaagaaccatgccttctggaagatccgtccggatcagaagatcgtg
gtgaagggcgattggcccacgccggaggatcgactgaaggtcgccgagcgcatcaccgcc
gatctggcgcgggtggcgggggcggcatag
DBGET
integrated database retrieval system
