Bradyrhizobium vignae: BRAD3257_0052
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Entry
BRAD3257_0052 CDS
T06968
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bvz
Bradyrhizobium vignae
Pathway
bvz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRAD3257_0052 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvz03019
]
BRAD3257_0052 (pnp)
03016 Transfer RNA biogenesis [BR:
bvz03016
]
BRAD3257_0052 (pnp)
Enzymes [BR:
bvz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BRAD3257_0052 (pnp)
Messenger RNA biogenesis [BR:
bvz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BRAD3257_0052 (pnp)
Transfer RNA biogenesis [BR:
bvz03016
]
Prokaryotic type
tRNA degradation factors
BRAD3257_0052 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
SPP91230
UniProt:
A0A2U3PQ16
LinkDB
All DBs
Position
BRAD3257:51012..53174
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AA seq
720 aa
AA seq
DB search
MFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLT
VDYQEKAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSH
DMENDPDVVAMVAASAALTLSGVPFKGPIGAARVGFANDEFVLNPTLDEMVDTQLDLVVA
GTADAVLMVESEAKELNEDVMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTAIDNSA
LEKEMLGLIEQELRAAYAIPIKQERYAAVGVAKEKVMAHYFPEGQEPKYDKLRVAGVFKE
LEAKIVRWNILDTGKRIDGRDVKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTG
EDEQYIDALSGTYKETFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHH
EFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFAVLS
DILGDEDHLGDMDFKVAGTEQGITSLQMDIKIEGITEEIMRVALGQAKEGRIHILGEMAK
ALNAARAELGEYAPRIESFKIPTDKIREVIGTGGKVIREIVEKTGAKVNIEDDGTVKVAS
SDGEAMKAAIKWIKSIASEPEVGQIYDGTVVKVMEFGAFVNFFGSKDGLVHISQLAANRV
QKTSDVVKEGDKVKVKLLGFDDRGKTRLSMKAVDQTTGEDLEAKEKAAEGEKAPREAAGE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagcattcagtcgagatcgactggggcggacgcccactcaagctcgaaacc
ggcaagatcgcccgccaggccgacggcgccgtcgtcgccacctatggcgagaccgtggtc
ctcgccaccgtcgttgcggccaaggcgccgcgcgaaggcgtcgacttcctgccgctgacc
gtcgactaccaggagaaggcctacgctgcgggacgcattcccggcggctatttcaagcgc
gagggccgtccgaccgagaaggagacgctggtctcccgcctgatcgaccgtccgatccgc
ccgctgttcgtcgacggctggcgcaacgagacccaggtgatcgtcaccgtgctgtcgcac
gacatggagaacgatcctgatgtcgtggcgatggttgcggcctccgccgccctgacgctg
tccggcgtgcccttcaaggggccgatcggcgcggcccgtgtcggcttcgccaatgacgaa
ttcgtcctcaacccgacgctcgacgagatggtcgacacccagctcgacctcgtcgtcgcc
ggcaccgccgacgccgtgctgatggtcgaatcggaggccaaggagctcaacgaagacgtg
atgctcggcgccgtgatgttcggtcaccgccacttccagccggtcatcaacgccatcatc
gagctcgccgagaaggccgcgaaggagccgcgcgaagtcaccgcgatcgacaattcggcg
ctcgagaaggaaatgctcggcctgatcgagcaggagctgcgcgccgcctatgcgatcccg
atcaagcaggagcgttatgccgccgtcggcgtcgccaaggaaaaggtgatggcccactac
ttcccggagggccaggagccgaaatacgacaagctccgtgtcgccggcgtgttcaaggag
ctggaagccaagatcgttcgctggaatatcctcgacaccggcaagcgcatcgacggccgc
gacgtcaagaccgtgcgcaacatcatcgccgaggtcggcgtgctgccccgcgcccatggc
tcggcgctgttcacccgcggcgagacccaggcgatggtcgtgaccacgctcggcaccggc
gaggatgagcagtatatcgacgcgctgtcggggacgtacaaggagacgttcctgctgcac
tacaacttcccgccctattcggtcggcgagaccggccgcctcggcggcaccaagcgccgc
gagatcggccacggcaagctggcctggcgcgcgatccatccggtgctgccgccgcaccat
gaattcccctacacggtgcgcgtggtctcggagatcaccgagtccaacggctcctcctcg
atggcctcggtctgcggcgcctcgctggcgctgatggatgcgggcgtgccgttgaagcgg
ccgaccgcgggcattgcgatgggcctgatcctcgaagacaagcgcttcgcggttctctcg
gacatccttggtgacgaggatcatctcggcgacatggacttcaaggtggccggcaccgaa
cagggcatcacctcgctccagatggacatcaagatcgagggcatcaccgaagagatcatg
cgcgtcgcccttggccaggccaaggaaggccgcatccacatcctcggcgagatggccaag
gccctgaacgcggcccgcgccgagctcggcgaatacgcgccgcgcatcgagagcttcaag
atcccgaccgacaagatccgcgaagtgatcggcaccggcggcaaggtgatccgtgagatc
gtcgagaagaccggcgccaaggtcaacatcgaggacgacggcaccgtgaaggtcgcctcc
agcgacggcgaggcgatgaaggccgcgatcaagtggatcaagtcgatcgcgtccgagccg
gaagtcggccagatctacgacggcaccgtcgtcaaggtgatggagttcggcgccttcgtg
aacttcttcggctccaaggacggcctcgtccacatcagccagctcgcggccaatcgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcttc
gacgaccgcggcaagacccgcctgtcgatgaaggcggtcgaccagaccaccggcgaagac
ctcgaggccaaggagaaggccgcagagggcgagaaggccccgcgcgaagcggcgggcgag
taa
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