Bradyrhizobium vignae: BRAD3257_6263
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Entry
BRAD3257_6263 CDS
T06968
Name
(GenBank) conserved protein of unknown function
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bvz
Bradyrhizobium vignae
Pathway
bvz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bvz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRAD3257_6263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvz03400
]
BRAD3257_6263
Enzymes [BR:
bvz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRAD3257_6263
DNA repair and recombination proteins [BR:
bvz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRAD3257_6263
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
GPAT_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
SPP97164
UniProt:
A0A2U3Q6Y5
LinkDB
All DBs
Position
BRAD3257:complement(5817802..5818719)
Genome browser
AA seq
305 aa
AA seq
DB search
MALPRGKPAIGVKAPFPGFVEPALASSIEKVPSGARWIHEIKFDGYRVQVHLANQAITIF
TRRGHDWTKRFRKAADDAWHIKAGSAIIDGEIVVPAADGSTDFSVLQNELKGSSKSIVLV
AFDLLYLNGRDIRKEPLLRRKAELRKIIAGSDVQFSESFEIDGKAMFAHACKLGLEGVVS
KVRDSAYASGRGNAWVKKTCTQRETLAIAGFALDEGKWDGIYLGRRKGGDLVYAGKVDHG
FDKVSAADLQKRLKPLIRKTQPYAKRIAHKGIWVEPKLLAEIEYRAKSAEGKVRHPLFKG
LREDL
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggcgttgccgcgaggaaaaccggcgatcggcgtcaaggcgccgttccccggcttcgtc
gaaccggccttggcatcctcgatcgagaaggtgccgtccggagcgcggtggattcacgag
atcaaattcgacggctaccgcgtccaggtccacctggcgaatcaggcgatcacgatcttc
acccggcgcgggcacgactggacgaagcgcttccgcaaagcggcggacgacgcctggcac
atcaaggccggatcggccatcatcgacggcgagatcgtcgtgccggcggcggacggcagc
accgacttctccgtgttgcagaacgagctcaagggctcctcgaagagcatcgtcctggtg
gctttcgatcttctctacctgaacggccgcgacatccggaaggagccgctgcttcgccgt
aaggccgagctcaggaagatcatcgccggcagcgacgtgcaattcagcgaaagctttgaa
atcgacgggaaggcgatgttcgcgcacgcctgcaagctcggcctcgaaggtgtggtctcg
aaggtgcgcgacagcgcctatgcgagcgggcgcggcaacgcctgggtcaagaagacgtgc
acgcagcgggagacgctggcgatcgccggcttcgccctcgacgagggcaagtgggacggc
atctacctgggccggcgcaagggcggcgatctggtctacgcgggcaaggttgaccacggc
ttcgacaaggtctccgccgccgacctgcagaagcgactgaagcccttgatccggaagacg
cagccctatgccaagcggatcgcgcacaagggaatctgggtcgagccaaagctcctcgcc
gagatcgagtaccgggcgaagtctgccgaaggcaaggtccggcacccgttgttcaaggga
ctgcgcgaagacctttga
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