Berryella wangjianweii: HLV38_03260
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Entry
HLV38_03260 CDS
T09831
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bwa
Berryella wangjianweii
Pathway
bwa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HLV38_03260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwa03400
]
HLV38_03260 (mfd)
Enzymes [BR:
bwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HLV38_03260 (mfd)
DNA repair and recombination proteins [BR:
bwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HLV38_03260 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
AAA_22
UB2H
RecG_dom3_C
Ilar_coat
Motif
Other DBs
NCBI-ProteinID:
QKF08003
UniProt:
A0A6M8J5V6
LinkDB
All DBs
Position
complement(771150..774488)
Genome browser
AA seq
1112 aa
AA seq
DB search
MEAAHALRMGREVVVVASARSLVRLMPPAQAGVCDPLELSSGLDLADPAAASAARRDPER
PVRVPRSFEQVVEVLLECGYQNVGQLEGPGTFCVHGGIVDVYPGNLPYPVRLDFFGDELD
DIRRIVPSTGQTIAALERISIYPVREFSCAEALRARACRALARPARTNPRLRELLEQAEG
GLHFDRADSLLPYLYDDANTLGAYVHADALVALMEPRALFDDAAHAIDDARKLAQGSNLS
FEGLMAASADLDFGKGQRVVYQSLMRVGGGVDAELPVKRVDVAGDPEKLFGRLRHLVDDD
FTVVFSAPNLRARTDMKLAFVDRGIPILERLDADDGGDADDGREVGDGPSASPASSAPAR
TALQREARARVARPDDPDQVRRRRLKRGVVNVVDVDVPLGMIVPKARLAIVSVFDTQGAG
SRRPTRRVDVTEVTFPYQPGDYVVHAVHGIAYFSGLVRQEVNGTEGDYLQLEYAEGDKLF
VPVDRLDRVTRYVGPEGSSPRLTRLNTSDWSRALSKARKATKKLAFDLVDVYARRAAVQG
FRFGPDTVWQREMEDAFPYSETPDQLAAIADVKADMQAARPMDRLICGDVGFGKTEVALR
AAFKATQDAKQVMVLCPTTILAQQHYTNFRERFEPFGVRVEVMSRFRTPAQQRAALEGFA
EGSVSVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQLKNLREHIDVLTLSATPIP
RTMQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDLVSQAIARELDRKGQVYYVSNRVR
SIDEAVRRVSEAAGEARVGVAHGQMDKDALERVMEEFSAGQLDVLVATTIIESGIDNPHT
NTLIIEDAQRLGLAQLYQLKGRVGRSSAQAYAYFMFPDNIPLTEEATARLVALGEHRELG
SGMRIAMRDLEIRGAGSILGAEQSGNMSAVGFDLFAQMLSEAVTAAREGEAAVAVGASRA
LSDVTVNLPGDAFLPEDYLPEVDERVRWYRRLASAPSAQAVDELRDELALQRPGMPMEAS
CLFAKARLRTLAFEHRIELVAVVDGKLVAAPIEVPARLSTSLRRAGGRWLASKRKLHLPL
KYFAAEDDLQLLEALGAFLADVAQEGRRTTQS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcccacgccctgcgcatggggcgcgaggttgtggtggtggcgagcgcgcgg
tcgctcgtgcgccttatgccgcctgcccaggccggcgtctgcgacccgttggagctgtct
tcggggctcgacctggccgaccccgccgccgcttccgccgcgcggcgcgaccccgagcgc
cccgtgcgtgtcccgcgctcgttcgagcaggtggtcgaggtgctgctggaatgcggttat
cagaacgtgggccagcttgagggccccggcaccttctgcgtgcacggcggcatcgtggac
gtgtacccgggcaacctgccctatccggtgcgccttgacttcttcggggacgagctggac
gacattcggcgcatcgtgccctccaccggccagacgatcgcggcccttgagcggatcagc
atctacccggtgcgtgagttctcgtgcgccgaggccctgcgcgcccgcgcctgtcgtgcc
cttgcgcgtccggctcgcacgaacccgcgcctgcgtgagctgcttgagcaggcggagggc
ggccttcacttcgaccgcgccgactccttgctgccctatctgtacgacgatgcgaacacg
ctgggcgcctacgtgcatgccgatgcgctggtggccctgatggagccgcgggccctgttc
gacgacgccgcgcatgcgatcgacgacgcgcgcaagctggctcagggctcgaacctgtcc
ttcgaggggctgatggccgcttccgccgacctcgacttcggcaaggggcagcgcgtggtg
taccagtcgctgatgcgcgtgggcggcggggtggatgccgagctgccggtgaagcgcgtg
gatgtggcgggagaccccgagaagctgttcgggcgcctgcgccacctggtagacgacgac
ttcacggtggtgttctcggctcccaacctgcgcgcgcgcaccgacatgaagctggcgttc
gtggatcgggggattcccattctcgagcgcttggatgccgatgatggcggcgacgccgat
gatggccgcgaagtcggcgacggtccgtccgcctcgcccgcttcctccgcccccgcgcgc
acggctttgcagcgcgaggcccgcgcgcgcgtcgcccgacccgacgatcccgaccaggtg
cgccggcgtcgcctgaagcgcggcgtggtgaacgtggtggacgtggacgtgcccctgggc
atgatcgttcccaaggcgcgtctggcgatcgtcagcgtcttcgacacccagggagcgggg
agccgccgtcccacgcgccgggtggacgtcaccgaggtcaccttcccatatcagccgggc
gactacgtcgtgcacgcggtgcacggcatcgcgtacttcagcgggctggtgcgtcaggag
gtgaacggcaccgagggcgactacctgcagctggagtacgccgagggcgacaagctgttc
gtgccggtggaccgcctcgaccgcgtgacccgctacgtgggccccgaggggtccagcccg
cgcctgacgcggctgaacaccagcgattggtcgcgcgcgctgtcgaaggcgcgcaaggcc
acgaagaagctggccttcgacttggtagacgtgtacgcccgccgcgccgcggtgcagggc
ttccgcttcgggcccgacaccgtgtggcagcgcgagatggaggacgcctttccctacagc
gagacgcccgaccagctggccgccatcgccgacgtgaaggccgacatgcaggccgctcgt
cccatggatcgcctgatctgcggcgacgtgggcttcggcaaaaccgaggtggccctgcgc
gccgccttcaaggccacgcaggacgccaagcaggtgatggtgctgtgccccaccaccatc
ctggcccagcagcactacaccaacttccgcgagcgcttcgagcccttcggcgtgcgcgtg
gaggtgatgtcgcgcttccgcaccccggctcagcagcgggcggctctggagggcttcgcc
gagggcagcgtgagcgtgctggtgggaacgcatcgcctgctgtcgcgagacgtgaacccg
cacgacctgggcctggtgatcatcgatgaggaacagcgcttcggcgtgggccacaaggag
cagctgaagaacctgcgcgagcatatcgatgtgctcaccctgtcggccacgcccattccg
cgcaccatgcagatgtcgctgtcgggcgtgcgcgacatgagcctgatcctcacgccgccc
gacgagcggcgcccggtggaagtgcacgtgggcgagtgggaccccgatctggtgtcgcag
gccatcgcgcgcgagctggaccgcaagggtcaggtgtactacgtgtcgaatcgcgtgcgg
tcgatcgacgaggcggtgaggcgcgtcagcgaggcggccggcgaggcgcgggtgggcgtg
gcccacggtcagatggacaaggatgcgcttgagcgcgtgatggaggagttctccgcaggt
cagcttgatgtgctggtggccactacgattatcgagagcggcatcgacaacccgcatacc
aacacgctgatcatcgaggacgcgcagcgcctgggtctggcccagctctaccagctgaag
ggccgggtgggtcgctcgtcggctcaggcctacgcgtacttcatgttccccgacaacatc
ccgcttaccgaggaggccaccgctcgcctggtggcgttgggcgagcatcgggagctgggc
agcggcatgaggattgccatgcgcgacctggagattcgcggcgccggcagcatcctgggc
gccgagcagagcggcaacatgtccgcggtgggcttcgacctgttcgcccagatgctgtcg
gaggcggtcacggctgcccgcgagggcgaggcggcggtcgcggtcggtgcctcccgcgcg
ctgtcggatgtgacggtgaacctgccgggagacgccttcctgcccgaggactacctgccc
gaggtggacgagcgcgtgcgctggtaccggcgcctggcttcggctccctccgcccaggcg
gtggacgagctgcgcgacgagcttgccctgcagcgcccggggatgccgatggaggcatcc
tgcctgttcgccaaggcgcgcctgcgcaccctggccttcgagcatcgaatcgagctggtg
gcagtggtggacggcaagctggtggccgcgcccatcgaggtgcccgcgcgcctatcgacg
tcgctgcgacgggccggaggccgctggctggcgagcaagcgcaagctgcacctgccgctg
aagtacttcgcagccgaggacgacctgcagctgctggaggcgctcggggcctttctggct
gacgtggcgcaagaggggcggcgcacgacgcagtcgtag
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