Berryella wangjianweii: HLV38_06840
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Entry
HLV38_06840 CDS
T09831
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bwa
Berryella wangjianweii
Brite
KEGG Orthology (KO) [BR:
bwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bwa03009
]
HLV38_06840 (rlmD)
Enzymes [BR:
bwa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HLV38_06840 (rlmD)
Ribosome biogenesis [BR:
bwa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HLV38_06840 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
PrmA
UPF0020
Methyltrans_SAM
Methyltransf_15
Methyltransf_11
Methyltransf_12
Ubie_methyltran
PCMT
Methyltransf_4
N6_N4_Mtase
FtsJ
Methyltransf_32
TPMT
Motif
Other DBs
NCBI-ProteinID:
QKF08069
UniProt:
A0A6M8J9S2
LinkDB
All DBs
Position
1668592..1670055
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AA seq
487 aa
AA seq
DB search
MSPFVPARGKPGGIGAGRASDRRTHAAEARYGAGQSSRRSPARSHARPHDRPHGRSPLAA
ARSDRASAVGQGGGGSGADILIGMYAPGTHRIVRTDGCLVENPQAQQVIRAVRSIMLRYG
MLAYNEDSHQGFMRHVVVRVGHRSGEVLVTLVTNGDDFPASRSFCRELTRRCPFVTTVVQ
NVNERQTNVVLGSRERRLYGPGFILDELCGLSFRISSQSFYQVNATQTEVLYRRTIELAQ
LSGTQRVIDAYCGTGTIGLVAAANGAREVVGVDAVESAIGDARENARHNGIDNARFVAAD
ATAFMRDMARAGERADVVIMDPPRAGATEECLAAIAELGADRVAYVSCNPHTHARDLRFL
AQQGYRLETLQGVDMFPHTAHVESIALLTREKPVKSYAYVNISPSELGMGGEIKKPTYEN
IREYVKKTHGLTVSSLNIAQMKAECGLEKQADRSGDKKQPNCPPEKREAILDAFRHFGMI
EDGSEED
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccttcgtgcccgcacggggaaaacccggcggcatcggcgcaggtcgcgcgagc
gatcgccgcacgcatgctgcggaggcgcggtacggggccggccaatcgtcacgccgctca
cccgctcgttcgcacgctcgcccgcacgaccgtccgcatggccgctcgcccttggcggcg
gctcgttcggatcgcgcatccgcagtcggtcagggaggcgggggatccggggcggacatc
ctgatcggcatgtacgcccccggcactcaccggatcgtgcgcaccgatggctgcctggtc
gagaacccccaggctcagcaggtaattcgagcagtgcgttccatcatgctgcgctacggc
atgcttgcctataacgaggattcccatcagggattcatgcggcacgtggtggtgcgcgtg
gggcaccgcagcggggaagtgctggtgacgctggttaccaatggcgatgattttcccgcg
tcgcgttcgttctgccgcgagctgacgcgccgctgccccttcgtcaccacggtggtgcag
aacgtgaacgagcgtcagacaaacgtggtgctgggttcgcgcgagcggcgcctgtacggc
cccggcttcattctggacgagctgtgcgggttgtcgtttcgcatctcgtcgcagtcgttc
taccaggtgaacgccacgcaaaccgaggtgctgtaccgtcgcacgatagagcttgcgcag
ctgagcggaacccagcgcgtgatcgacgcttactgcggaacgggaacaataggcctggtg
gcagctgcaaacggcgctcgcgaggtagtgggcgtggatgcggtggagtcggcgatcggc
gatgcgcgggaaaacgcgcgccacaacggcatcgacaacgcgcgcttcgtggccgccgat
gccacggccttcatgcgcgacatggctcgcgccggcgagcgggccgatgtggtgatcatg
gatccaccgcgcgcgggggcgacggaggagtgcctggctgcgattgctgagctgggcgcc
gaccgcgtggcctacgtgtcgtgcaatccgcatacgcacgcacgcgacctgcgatttctg
gcgcagcaaggctaccggcttgagacgctgcagggcgtggacatgtttccgcacaccgcg
catgtggagtcgatagcgctcctaacccgagaaaaacccgtcaagagctacgcatacgtc
aacatctccccgtccgagcttggcatgggcggtgagattaagaagcccacgtacgagaac
attcgcgagtacgtgaagaagacccacggtctgaccgtgagctccctgaacatcgcgcaa
atgaaagcggagtgcgggcttgagaagcaggctgaccgctccggtgacaagaagcagccg
aactgcccgcctgagaagcgcgaggcgattttggacgcgttccgtcactttgggatgatt
gaggacgggtccgaggaggattag
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