Bacillus wiedmannii: CT694_00310
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Entry
CT694_00310 CDS
T05831
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bwd
Bacillus wiedmannii
Pathway
bwd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bwd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CT694_00310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwd03400
]
CT694_00310 (mfd)
Enzymes [BR:
bwd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CT694_00310 (mfd)
DNA repair and recombination proteins [BR:
bwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CT694_00310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AZJ18299
LinkDB
All DBs
Position
54144..57674
Genome browser
AA seq
1176 aa
AA seq
DB search
MIGLLEQFYKNEEIQSVINGLEDGLKEQLVSGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPMKELWKQRQIEINLGQEIDLDTFLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQDKKESVRFGPATEFLFSQEELKSGI
EHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGKSIEQMFKYLSIFYKEPASLIDY
LPEDGIVVLDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHSFEEFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMQLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQIYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNEGELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGVENTVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTILFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgataggtttattagagcaattttataaaaatgaagagatccaatcggttattaatgga
ctagaagatggtttaaaagaacaacttgtatcaggtatggcaacctcttctcgttcgtta
ttaatggcggccttatataaaaaaacaaaaaaatcacaacttattgtgacgcataattta
tatcaagcacaaaaagtgcatgaagatttagtggcgttacttggtgaaaaagatgtgtgg
ttatacccagtaaatgaattgatagcatcagaaattggtgttgcaagcccagaattgaag
gcgcaacgtattgaagtattgaatcgtttagcggcaggagagaacgggattattgtagcg
ccagttgcaggactacgcagatttttaccaatgaaagagttgtggaagcaaaggcaaatc
gaaatcaatctagggcaagagattgatttagatacattcttgcatactttacatcatatt
ggttatgagcgtaagtcgatggtagaagctcctggggaattcagtttgcgcgggggaata
ttagatatttacccattaactgaagagttaccatttcgtattgaatttttcgatacagaa
gttgattctattcgattatttgatgtggatgaacagcgctctcaagataaaaaagaaagt
gttagatttggtccagcaacagagtttttattttcacaggaagaattgaagtcgggaatt
gagcatcttgaggaaggcttgactaagacgatgcaaaaactttccgatgataaattgaag
actacagtgcttgaaacggtaagtcatgaaattgagatgttaaaaaacgggaaaagtata
gaacagatgtttaaatatttatctattttctataaagaacctgctagtctgatagattat
ttacctgaagatggtattgtggttttggatgagatttctcgtattcaagaaacggcatca
catcttgaaacggaagaggcggaatggtatatatcacttcttggtgagggaacaattatt
caagatttatctttctcacactcgtttgaggaatttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttacgtcatatagcacatacacatccgcaaaatattgtgaat
gtgacatgtaaaacaatgcaagatttccatgggcagatgcagttgttgaaaactgaaatt
gatagatggaacgaagggcattttacgactgttgtgctcggcacagatgatgaacgtgta
aaaaaactacaacatattttaagtgattatgatattgaggcagatatcgtagagggcaca
gatatattattgcctggaaggttgcaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgttattactgaaaaagagctttttcataaaaaagttaaa
aaatcacaacgtaagcagaagttatctaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcatgtaaatcatggtataggtaaattcttaggtatcgag
acactagagattaatggtgttcataaagattacttgaatattaaatatcaaggtaatgat
aagttatacgttccaattgaacaaattgaccaagtgcagaaatatgtaggatctgaaggt
aaggatcctaaagtttataaattgggcggaaatgattggaaaaaggtcaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaaaggttatgcatatacaccagatacggcagaacaacaagaatttgaatcttctttc
ccatatcaagagacagaggatcaattacgttctattgacgagattaagaaagatatggaa
cgtggacgtccgatggataggcttctttgtggtgatgtaggatatggaaagacggaagta
gctatccgtgcggcatttaaggcaattatggatgaaaaacaagttgcaattttagtgccg
acaacgatccttgcacaacaacactatgaaacaattcgagagcgttttcaagattatcca
atcaatataggattattaagtagattccgtacgagaaaacagcaaaatgaaacaattaaa
ggcttaaaagatggtacggtagatatcgtaatcggaacgcatcgtattttatctaaagac
gttacttataaagatttaggtcttcttattattgatgaagaacaaaggtttggtgtaacg
cataaagaaaaaattaaacaattaaaagcaaatgttgacgtgttaacattaacggcaact
ccgattccgcgtacactccatatgtctatgcttggtgtgcgtgacttatctgttattgag
acaccaccagaaaatcgtttcccagtccaaacgtatgtagtagagtataatccagcgtta
atgcgagaagcgatagaacgagagcttgcaagaggtgggcaaatttacttcctatataat
cgtgtggaggatatcgaaagaaaagcagatgaaatttcgatgttagttccagacgcgcgt
gtaacgtatgcacatgggaaaatgaacgagggtgaattagagtctgttatgctatcgttt
ttagaagggcagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacgttaattgtatttgatgcagatcgtatgggattatcgcagctgtat
cagcttcgtggtcgtgttggacgttctaatcgtgttgcatatgcatactttgcatacaaa
cgagataaagtgttatcagaagttgcagagaagcgtctgcaagccattaaagagttcaca
gagcttgggtcaggtttcaaaattgcgatgagagacttatccattcgtggtgcaggtaac
ttgttaggagccgaacagcatggatttattgattctgtcggatttgatctatattctcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggggttgaaaatacagttaat
gttgaaattgatttagaagtagatgcatatttaccagatgcttatatttcagatagtaaa
caaaagattatgatgtataaacagtttagaggtgtttctgcaattgaggatattgaagag
ttgcaggaagagatgatagatagatttggtgattacccgcaagaagttggttacttattg
caaattgcaaatattaaagtattggcaatgaaagaacaaattgagttaattaagcaaaat
aaatttgaagtgacaattctgttctcagaacaagcaagtcaaaatattgatggcggaaaa
ttattcatgcttggaaatagttttggacgtatgattggtctaggaatggaaggatcgcaa
ttgaaaatcgttatgaaaacaaatggtttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcctaccagatgtaaaaaaagaagtcataaatgcctaa
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