Bacillus wiedmannii: CT694_21390
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Entry
CT694_21390 CDS
T05831
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bwd
Bacillus wiedmannii
Pathway
bwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CT694_21390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bwd03019
]
CT694_21390
Messenger RNA biogenesis [BR:
bwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CT694_21390
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AZJ22073
LinkDB
All DBs
Position
4072353..4074020
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AA seq
555 aa
AA seq
DB search
MKFLKNDQAAVFALGGLGEIGKNTYAVQFQDEIIIIDAGIKFPEDELLGIDYVIPDYTYF
VRNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLAIALIKNKLEEHGLLRKAKLY
EIQEDDVIKFKKTSVSFFRTTHSIPDSYGVVVKTPQGQVVHTGDFKFDFTPVGEPADLTK
MAEIGKDGVLCLLSDSTNSEVPNFTMSERRVGDSIQDIFRKVEGRIIFATFASNIHRLQQ
VVEAAVENNRKVAVFGRSMEAAIEIGQNLGYIRCPKDTFIDTAQLNRLPANKVVILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVSRTINMLYRAGADVIHGKL
SNIHTSGHGGQEEQKLMLRLIKPKYFMPIHGEYRMQRMHMKLANDCGIPEENCFIMDNGD
VLALRSDEASVAGKIPSGSVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKEFKV
AAGPDIISRGFVYMRESSDLINDAQTLITTHLEKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctaaagaatgatcaagctgccgtttttgctttaggtggacttggtgaaatc
ggtaaaaatacatatgctgttcaatttcaagatgaaattattattattgatgctggaatt
aaatttccagaagacgaactcctcggaatcgattatgtaataccagattacacttatttt
gtgcgaaacgaagataaaattaaaggattattcattacacatggtcacgaagatcatatc
ggtggaattccttacttattacgtcaagtaaacatcccgatttatggcggaaaattagca
attgcactaatcaaaaacaaattagaagagcacggattacttcgtaaagcaaaactttat
gaaattcaagaagatgatgttattaaatttaaaaagacatctgtttccttcttccgtaca
actcacagtatcccagattcatacggagttgttgtgaaaacacctcaaggacaagttgtt
catactggcgatttcaaatttgatttcacaccagtcggtgaaccagcggacttaacaaaa
atggctgaaatcggaaaagacggcgtactttgtctcttatctgacagtacaaacagtgaa
gttccaaactttacaatgtctgagcgccgtgttggtgatagtattcaagatattttccgc
aaagtagaaggtcgtattatctttgcaacctttgcatcaaatatccatcgtctacaacaa
gttgttgaagcggctgttgaaaacaatcgtaaagtggctgtgttcggtcgcagtatggaa
gcggcgattgaaatcggacaaaaccttggttatattcgctgtccgaaggatacattcata
gatacagctcaactaaaccgcctaccggctaataaagttgttattttatgtacaggtagt
caaggtgagccaatggcagcactttcacgtattgctaatggtactcatcgtcaaattcaa
atcattcctggcgacacagttgttttctcttcttcaccaatccctggtaatacaattagt
gtaagccgtacaattaacatgttgtatcgtgctggtgctgatgtaatccacggaaaactg
tcaaacattcatacgagtggacacggtggacaagaagaacaaaaactaatgcttcgtcta
attaaaccgaagtatttcatgccaattcatggtgaataccgcatgcaacgtatgcatatg
aagttagcaaacgattgtggtattccagaagaaaactgtttcatcatggataatggagat
gttcttgctcttcgttctgatgaagcaagcgtagctggtaaaataccatctggatctgtc
tatattgacggaaatggtattggagatatcggtaatatcgtgttacgcgatcgtcgtatt
ctttctgaagaaggacttgttattgtagttgtaagcattgatatgaaagagtttaaagtt
gcagcaggacctgatattatctcacgtggttttgtgtatatgcgcgaaagtagtgattta
attaatgatgctcaaacattaattacaactcatttagaaaaagtaatggagcgtaaaaca
acacaatggtctgaaattaaaaatgaaattacagatacattagcaccattcctatatgag
aaaacgaaacgtcgcccaatgattttaccaatcattatggaaatataa
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