Bacillus mycoides KBAB4: BcerKBAB4_0098
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Entry
BcerKBAB4_0098 CDS
T00642
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bwe
Bacillus mycoides KBAB4
Pathway
bwe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bwe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BcerKBAB4_0098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bwe03021
]
BcerKBAB4_0098
03400 DNA repair and recombination proteins [BR:
bwe03400
]
BcerKBAB4_0098
Enzymes [BR:
bwe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BcerKBAB4_0098
Transcription machinery [BR:
bwe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BcerKBAB4_0098
DNA repair and recombination proteins [BR:
bwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BcerKBAB4_0098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABY41367
UniProt:
A9VP70
LinkDB
All DBs
Position
117530..121141
Genome browser
AA seq
1203 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTESGDTPLDKKQLLSEKEYRAYRDRYGSTFHAAMGAEAIKKLLQ
DIDLDKEVDFLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNHPSWMILEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVGKGLAHNIKSAKRKIERVHPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMVFKDANEAILAYQNGYVHLHTRVAVA
ASSVNNVTFTEEQKSKLLLTTVGKLIFNEILPESFPYINEPTNSNLEKETPAEYFVEKGA
NIKEIIASREEVAPFSKKILGNIIAEVFKRFQITETSRMLDRMKNLGFKYSTKAGITVGV
SDILVLGEKDEILHEAQAKVDNVIKQFRRGLITEEERYDRVISIWSNAKDVIQGKLMKSL
NKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRQDDCGTDRGLLIGAIKEGNEVIESLY
DRLVGRFARKTVKHPETGEVLVVENQLITEDIAHIVEKSGVETVNIRSAFTCNTRHGVCK
KCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGARLKVTLGQPISHG
KELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVS
DAGETDVLPGTLLDIHQFTDANAKVLLKGKQPATARPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYRKVDLVKTTQDNMNVENDEVY
VEQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataactttgaatatatgaagattggacttgcttcacctgacaagatt
cgttcttggtcatacggtgaagttaagaaaccagaaacaattaactatcgtacgttaaag
cctgaaaaagatggcttgttctgtgagcgtattttcggaccacaaaaggactgggaatgt
cattgcgggaaatataaacgtgtacgttataaaggtgtagtttgtgatcgatgtggcgtt
gaagtaacgcgtgcaaaagttcgtcgtgaacgtatgggtcatatcgaattagctgctcct
gtatctcatatttggtatttcaaaggtatcccgagccgcatgggacttgtcttagacatg
tcccctcgcgcgcttgaagaagtaatttatttcgcttcttatgttgtaacagaaagtgga
gatacaccacttgataagaagcaattactttctgaaaaagaataccgtgcatatcgtgat
cgatatggcagtacattccatgctgctatgggtgcagaagcgattaaaaaattactgcaa
gacatcgatttagataaagaagtagacttcttaaaagaagaattaaaaacagcacaagga
caacgccgtactcgtgctattaaacgtctagaagtattagaagcattccgtaactctgga
aatcacccatcttggatgatcttagaggttcttccagttatcccaccagaactacgccca
atggtacagttagatggtggacgttttgctacttctgacttaaacgacttatatcgtcgt
gtaattaaccgtaacaaccgtttaaaacgtctattggacttaggtgcaccaagcattatc
gttcaaaacgaaaaacgtatgttacaagaagctgtagacgcattaatcgataatggtcgc
cgtggccgtccagttactggaccaggtaaccgtccattaaaatcactatctcacatgctt
aaaggtaaacaaggacgtttccgtcaaaacttattaggtaaacgtgttgactactctggc
cgttctgtaatcgttgtaggaccgaacttaaagatgtaccaatgtggattgccgaaagaa
atggcacttgaattgtttaaacctttcgttatgaaagagttagttggaaaaggattagca
cacaacattaagagtgctaaacgtaaaatcgagcgtgtacaccctgaagtttgggacgtt
ttagaatctgtgatcaaagagcatccagtacttctaaaccgcgcaccaacacttcaccgt
cttggtatccaggcgtttgaacctacactagtagaaggtcgtgcaatccgtcttcaccca
cttgtatgtactgcatacaacgcggactttgacggtgaccaaatggcggttcacgttccg
ttatcatcagaggcacaagcagaagctcgtatccttatgttagcggcacaaaacatcttg
aatccaaaagacggaaaaccagttgttactccatctcaggatatggtattaggtaactat
tacttaacacttgagcgcgagggtgcaatcggtgaaggtatggtcttcaaagatgcaaac
gaagcaatacttgcataccaaaatggatatgtacatctgcacacacgtgttgcagttgct
gcgagttcggtaaataatgtaacgtttactgaagagcaaaagagtaagcttctattaaca
acagttggtaaattaatatttaacgaaatcttaccagagtcgttcccttatattaatgaa
ccaacaaactcaaaccttgaaaaagaaacaccagcggaatatttcgttgaaaaaggtgcg
aacattaaagaaattattgctagtcgcgaagaagtggcaccatttagcaagaaaatcctt
ggtaatattattgcggaagtattcaaacgtttccaaattacagaaacgtctcgcatgctt
gaccgtatgaaaaacttaggatttaaatactctacaaaagctggtattacagttggggta
tcagatattcttgtattaggtgaaaaagatgaaattctccatgaagcacaagcaaaagta
gataatgtaattaaacaattccgtcgcggtttaatcacggaagaagaacgttacgatcgc
gttatctctatttggagtaatgcaaaagatgttatccaaggaaagctgatgaaatccttg
aataaacgcaacccaatcttcatgatgagtgattccggtgcccgtggtaacgcatcgaac
tttactcagcttgctggtatgcgtggtctgatggccaatccatctggtcgtatcattgag
cttccgatcaaatcgagtttccgtgaaggtttaacagtacttgagtacttcatctctacg
catggtgcgcgtaaaggtcttgccgatacagcacttaaaactgccgattctggttactta
acacgtcgtcttgtagacgttgcacaagatgtaattgttcgtcaagatgattgtggaaca
gatcgcggtttactaattggtgcgattaaagagggtaatgaagttattgagtcactatat
gatcgtcttgttggacgttttgcaagaaaaactgtaaaacatcctgaaacaggtgaagta
ttagttgttgaaaatcaattaattactgaagatattgctcatatcgttgaaaagtcgggt
gttgaaactgtaaacattcgttcagcgtttacgtgtaatactcgccatggtgtatgtaag
aagtgttacggtcgtaacttagcaactggtacagacgtagaagtaggagaagcggtaggt
attatcgcagctcaatctatcggtgagccaggtacacagttaacgatgcgtacgttccat
acaggtggggttgccggggatgatatcacacaaggtttacctcgtatccaagagatcttc
gaagctcgtaatccgaagggtcaggcagttatcagtgaaattgacggtgttatcgcagcg
atcaacgatgttaaagatcgccaagaagtagttgtacagggtgaagttgaagctcgtacg
tatgctattccttacggtgctcgtctgaaagtaactctaggacagccaattagccacggt
aaagagttaacagaaggttctattgatccgaaggaattactaaaagtaacggacattaca
gcagttcaagaatacttattacgtgaagttcaaaaagtataccgtatgcaaggggtagaa
attggtgacaaacacgtagaagtaatggtacgtcaaatgctacgtaaagttcgtgtaagt
gatgcgggtgaaacagatgtattaccaggaacattactagatatccatcagtttactgat
gcgaatgcgaaggtgttactgaaaggtaaacaaccagcaacggctagaccggttctactt
ggtattacaaaagcttcacttgagacagattcgttcttatctgcggcgtcattccaagaa
acaactcgtgttctaacagatgcagcaattaagggtaaacgcgatgagcttctaggattg
aaagagaatgttattatcggtaagcttgttcctgctggaacaggtatgaatcgttatcgc
aaagtggatcttgtaaaaacaacacaagataacatgaatgtagaaaacgatgaagtttat
gtggaacagtaa
DBGET
integrated database retrieval system
