Bacillus mycoides KBAB4: BcerKBAB4_0225
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Entry
BcerKBAB4_0225 CDS
T00642
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bwe
Bacillus mycoides KBAB4
Pathway
bwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BcerKBAB4_0225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bwe03019
]
BcerKBAB4_0225
03009 Ribosome biogenesis [BR:
bwe03009
]
BcerKBAB4_0225
Enzymes [BR:
bwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BcerKBAB4_0225
Messenger RNA biogenesis [BR:
bwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BcerKBAB4_0225
Ribosome biogenesis [BR:
bwe03009
]
Prokaryotic type
rRNA helicases
BcerKBAB4_0225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ABY41493
UniProt:
A9VQE7
LinkDB
All DBs
Position
236171..237787
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AA seq
538 aa
AA seq
DB search
MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL
LDKVDTNKDAVQGIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKKH
PHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL
FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSP
ELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK
RKVDRMEAPTLDEALEGQQRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAALK
MMTKEPDTTPIALTSEPPVVSRGGGGGSKKRGGNGSGYRDGNRNRSRDGRGGGDGRNRDR
NRDGRGSGSGDGRNRDRNRDGGSRDAGSRDGNRGRKGEGRPGSSNGRGERKHHSRPQA
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttcgagaattaggattaagtgagtctttactacaatctgttgaaagtatg
ggttttgaagaggctacgccgattcaagctgaaacaattccacatgcattgcaaggtaag
gatattattgggcaagcgcaaacaggtacagggaaaacagcagcattcggattaccacta
ttagataaagtggatacaaataaagatgcagttcaaggtattgttatcgcgccaacgcgc
gaattagcaattcaagttggagaagagctatacaaacttggtaaacataaacgtgttcgt
attctaccaatttatggtggtcaagatattaaccgccaaattcgtgctctaaaaaaacac
ccacacattattgttggtacgccgggtcgtattttagatcatattaaccgtaaaacactt
cgcctgcaaaacgtagagacagttgttcttgacgaagcagatgaaatgttaaacatgggc
ttcattgaagatattgaagcgattttaacagatgtaccagaaacacatcaaacattatta
ttctcagcgacaatgccagacccaatccgtcgcattgctgagcgtttcatgactgagcct
caacacattaaagtaaaagcaaaagaagtaacaatgccaaacattcagcagttctattta
gaagtgcaagaaaagaaaaagtttgacgtgttaacacgcttactagatattcaatctcca
gagcttgcaatcatattcggtcgtacaaagcgtcgtgttgatgaattatcagaagcatta
aacttacgtggttatgcagcagaaggtattcatggtgacttaacacaagcaaaacgtatg
tctgtattacgtaaatttaaagaaggtgctatcgaagttcttgttgcaacagacgttgct
gcacgtggtcttgatatttcaggcgtaacacacgtatacaacttcgatatcccgcaagat
ccagaatcatacgttcaccgtatcggtcgtactggccgtgccggtaaaaaaggtattgca
atgttatttgtaacgccacgtgaatcaggacaattgaaaaatatcgagcgtacaacaaaa
cgtaaggttgatcgtatggaagcaccgacacttgacgaggcactagaaggtcaacaacgt
ttaatcgctgaaaaacttcaaagcacaattgaaaatgataacttatcatactataagcgt
attgcagaagaaatgttagaagagaatgattctgtaacagtagtagctgctgctttaaaa
atgatgacaaaagagccggatacaactccgatcgctttaacatcagaaccaccagttgtt
tcaagaggtggcggtggcggttctaaaaaacgcggtggtaacggaagtggataccgtgat
ggtaaccgtaatcgtagtcgtgatggacgcggcggtggcgatggtcgtaaccgtgatcgc
aatcgtgatggacgtggaagcggaagtggcgatggtcgtaaccgtgatcgtaatcgtgat
ggcggtagccgtgatgctggtagccgtgatggcaaccgtggtcgtaaaggtgaaggtcgc
cctggatcttcaaatggacgcggcgaaagaaaacatcatagccgtccacaagcttaa
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