Bacillus mycoides KBAB4: BcerKBAB4_2963
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Entry
BcerKBAB4_2963 CDS
T00642
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bwe
Bacillus mycoides KBAB4
Brite
KEGG Orthology (KO) [BR:
bwe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bwe03016
]
BcerKBAB4_2963
Enzymes [BR:
bwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BcerKBAB4_2963
Transfer RNA biogenesis [BR:
bwe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BcerKBAB4_2963
Prokaryotic type
tRNA splicing ligases
BcerKBAB4_2963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SpoIISA_toxin
DUF6922
Ku_PK_bind
Motif
Other DBs
NCBI-ProteinID:
ABY44149
UniProt:
A9VL48
LinkDB
All DBs
Position
complement(3012342..3013391)
Genome browser
AA seq
349 aa
AA seq
DB search
MVEAAYFNDRREGIVHSFRKLGDKYDIGCGMEVVMINKKKEEINFDHLDETIRQFVPSGF
RIRDKEHRFSKMIDFDSVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVFIVIHSGSR
NLGKQIAEYYQNLAYEQLINVKSIKEEIIERLTKEGRQKEIHEAIRGIKKPTIRKELAYL
EGQGFKDYMNDMKIAQKYAELNRKAMMDEIITRMDWKVIDQFTTIHNYIDMENMILRKGA
ISAQKDERVIVPINMRDGSIIALGKGNADWNFSGPHGAGRIMSRKKAKEVLNLEDFQNTM
TAVWTTSVAESTLDEAPMVYKPIDEIVENTKETIDIKHIIKPIYNFKAN
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagctgcttacttcaatgaccgtagagaaggtatagtccactctttcaggaaa
ctgggagataagtacgatattggttgtggcatggaagttgttatgattaataagaagaaa
gaggaaatcaacttcgatcatttagacgaaacgattcgtcaatttgtcccaagtggtttt
cgtattcgagataaggaacatcgattttcaaaaatgattgattttgatagtgtaagagct
ccattcacattacaacgtgctcaaaagagtattggtacgcttggtggtggaaatcatttt
gtcgaactgaatgaggatgataaggggaatgtattcattgtcattcatagtggttctcgt
aatttaggtaaacaaatagcagagtattatcaaaaccttgcttatgagcaacttatcaac
gttaaatctattaaagaggaaatcattgaacgtttaacaaaagaaggcagacaaaaagaa
atacatgaagctatacgcgggattaagaaaccgacgattcgtaaagagttagcttattta
gaaggtcaaggttttaaagactacatgaatgatatgaaaatcgctcaaaaatatgcggag
ttaaatcgtaaagcaatgatggatgaaatcatcactagaatggattggaaagtaatagat
caattcactacaattcataactacatcgatatggaaaatatgattttacgaaaaggtgct
atttcagctcagaaagatgaacgagtaatcgttccaattaacatgagagacggttcaatc
attgcattgggtaaaggaaatgcagattggaacttttctggaccgcatggagcggggcgc
attatgagtcgtaagaaggctaaagaagtacttaacttagaggattttcaaaatacaatg
acagcagtttggactacatctgttgcagaaagcactttagatgaagctccaatggtatat
aagccaatagatgaaattgttgagaatacaaaagaaacaatcgatatcaaacatattatt
aagccgatttacaattttaaagcgaactaa
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