Bacillus mycoides KBAB4: BcerKBAB4_4256
Help
Entry
BcerKBAB4_4256 CDS
T00642
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bwe
Bacillus mycoides KBAB4
Pathway
bwe03410
Base excision repair
bwe03430
Mismatch repair
bwe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BcerKBAB4_4256
03430 Mismatch repair
BcerKBAB4_4256
03440 Homologous recombination
BcerKBAB4_4256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwe03400
]
BcerKBAB4_4256
DNA repair and recombination proteins [BR:
bwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BcerKBAB4_4256
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BcerKBAB4_4256
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BcerKBAB4_4256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
PhoU
Motif
Other DBs
NCBI-ProteinID:
ABY45415
UniProt:
A9VIN5
LinkDB
All DBs
Position
complement(4251581..4253902)
Genome browser
AA seq
773 aa
AA seq
DB search
MLQPKTRWKEKEYNEELVSELANKLQLSPLVTSLFLGRGLNTEDKIVDFLNTADQEFHDP
FLLEGMDRTVERVKKAIENGEQILIFGDYDADGVSSTTVLYLALKELGAEVEFYIPNRFT
EGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEAL
AIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VQRGLKHMRMTRNIGLKALFKVANVSQSEITEESIGFALAPRINAVGRLEDATPAVHLLL
SEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVENNFPPEENKVLVLAKEGWNPGVI
GIVASKLVERFYRPTIVLSIDPHKETAKGSARSIAGFDLFANLSDCRELLPHFGGHPMAA
GMTLNMNDVDELRRRLNEQADVILTAEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGTYAKEISPVAKVSV
VGEVSINEWNNFKKPQLMVQDIAVEAWQLFDWRSMRNVEANLAELPKEKITMVYFSEEVL
NKFSLEGYKEHIVHASEVAHFDDQYIVLLDLPKGTDELGDVFKAGFPARIYTLFYQENNH
LFSTVPTREHFKWYYSFLSQKTPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRDHK
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
gtgttacaaccgaagacgcgttggaaagaaaaagaatataatgaggaactagtgagtgaa
ttagcaaataaattgcaactatcacctcttgtgacttcattatttcttggcagaggctta
aatacagaagataagattgtagactttttaaatacagcagatcaagaatttcatgatcca
tttttacttgaaggaatggatcggactgtagaacgtgtgaaaaaagctattgaaaatgga
gaacaaatattaatatttggcgattacgatgcggacggagtaagtagtacgactgtgtta
tatcttgctctcaaagaattaggtgcagaagtagagttttatattccaaatcgttttact
gaaggctatgggccaaatgaagaagcgtttcgttgggcgcacagtgcagggttctcacta
attattactgtcgatactggtatcgcagcggtacatgaagcgaaggtagcgaaggaactt
ggaatagatcttattattacagatcatcatgagccaccaccagaattaccagaggcactt
gcgattattcatccgaaattagaaggcggtgtttatccgtttcattatttagcgggtgtt
ggtgttgcatttaaagttgcacatgcacttttgggtcgtgtaccagagcatttgttggaa
attgcagtaatcggtacggtagccgatttagtatcgcttcacggtgaaaatagattgtta
gtacagcgtggactgaagcatatgcgaatgactcggaatatcggtttaaaggcgttattt
aaagttgctaacgtttcgcaaagcgaaattacagaagaaagcatcgggttcgcactcgca
cctcgtattaatgcagttggtcgtttggaagatgcaacacctgctgtacaccttttatta
tcagaagatccagaggaagcgaaagagctagctgaagaaattgatgagctgaacaaactt
cgaaaagatattgtaaagcaaattactgaagaagctatcgctgaagtcgaaaataatttc
ccgccagaagaaaataaagtattagtccttgcaaaagaaggttggaatccaggggtaatt
ggaattgtcgcttctaagttagttgaacgtttttatcgtccaacgattgtattaagcatt
gatcctcataaagaaacagcaaagggatcggctcgtagtattgcaggatttgatttgttt
gcaaacctttcagattgccgtgaattgttaccgcatttcggaggtcatccgatggcagcg
ggaatgacgcttaatatgaatgatgtggatgaattaagacgcaggttaaatgagcaagca
gatgtaattttaacagcagaagattttattccgattacagcagtggatgcattttgtaaa
gtagaggatgtaacgcttgccgcgattgaggatatgcaaaagttagcgccatttggcgta
ggaaatccgaaaccgcgtattgcggtgaaagatgccgaattagaaagtatccgtgcaatt
ggatctgatggttcgcatttaaaaatggctcttcgtgatggacaagcaacactggacacg
attggatttggatttggtacttatgcgaaagaaatctctccagttgcgaaggtttctgta
gtaggagaagtgtccattaatgaatggaataactttaaaaagccgcaattaatggtgcaa
gatattgctgtagaggcatggcaattatttgactggcgtagtatgcgtaatgtagaagca
aatttagcagaacttccgaaagaaaaaataacaatggtgtatttttctgaagaggtattg
aataaattttctttagaaggatataaagagcatatcgtgcatgcatcagaggtagctcat
tttgatgatcaatacattgtgctacttgatttgccgaaaggaacagatgaattaggtgat
gtatttaaggctggattcccagctcgaatttacacgctattttatcaagagaataatcat
ttatttagtacggtcccaacgagggaacattttaaatggtactattctttcttaagccaa
aaaacaccattttctttaaggcaatatggggaacaactgtgtcgtcataaaggttggtca
aaagatacagtaaatttcatgacacaggtgttttttgagttagaatttgttacaataaaa
gacggtgtcatttttatggcagacaaaaaacaaaagcgtgatttaattgaatcgaacaca
tatcgtgagaaaatgaaccacttacaattagagaaagaattggtttatagcacatatcag
caactatatacatggtttgaaacgattcgtgatcataaataa
DBGET
integrated database retrieval system
