Bacillus mycoides KBAB4: BcerKBAB4_4959
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Entry
BcerKBAB4_4959 CDS
T00642
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
bwe
Bacillus mycoides KBAB4
Pathway
bwe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BcerKBAB4_4959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwe03400
]
BcerKBAB4_4959
DNA repair and recombination proteins [BR:
bwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BcerKBAB4_4959
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BcerKBAB4_4959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_19
AAA_30
UvrD-helicase
AAA_7
AAA
AAA_22
Kinesin
UFL1
AAA_16
DUF1280
P-loop_SecA
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
ABY46107
UniProt:
A9VQ80
LinkDB
All DBs
Position
complement(4921064..4923040)
Genome browser
AA seq
658 aa
AA seq
DB search
MEHPFEIISEYSPQGDQPGAIEKLVEGINSGKKKQVLLGATGTGKTFTISNVIKEVQKPT
LVMAHNKTLAGQLYSELKDFFPNNSVEYFVSYYDYYQPEAYVPHTDTFIEKDAQINDEID
KLRHSATSSLFERDDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEKDRNQLLRELVDVQ
YGRNDIDFKRGTFRVRGDVVEIFPASLDEHCIRIEFFGDEIDRIREVNALTGEVLAERDH
VAIFPASHFVTREEKLKVAIENIEKELEERLKELNDNGKLLEAQRIEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPAGSTPYTLLDYFPEDFLIVMDESHVSVPQVRAMYNGDQARKQV
LVDHGFRLPSALDNRPLTFDEFEEKTNQVIYVSATPGPYELEQSPKAIEQIIRPTGLLDP
PIDIRPIEGQIDDLLGEIHDRIAKNERVLITTLTKKMSEDLTDYLKDVGIKVNYLHSEIK
TLERIEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNANGRVIMYADRITRSMGIAIEETQRRRSIQEAYNEKHGITPKTIQKGVRDVIRATT
AAEDTEIYEVTPAKKMTKKERENTIAKMEAEMKEAAKALDFERAAELRDLLLELKAEG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
ttggaacatccatttgaaattatctcagagtattccccgcaaggtgatcagccgggagcg
atagagaagcttgtagagggaattaatagtggaaagaaaaagcaagtgttgcttggagcg
acaggaacgggtaagacatttacgatttcaaatgtcattaaagaagtgcagaagccaaca
cttgtaatggctcataataaaacgttagcaggacagttatatagtgagctgaaagatttc
tttcctaacaattctgtggagtattttgttagttattacgattattatcagccggaagcg
tacgtaccacatacggatacgtttattgaaaaagatgcgcaaattaacgatgaaattgat
aaattacgccactcggcaacgtcttccttatttgaacgagatgatgttattatcgttgcg
agtgtttcgtgcatatacggtttaggttctccggaagaataccgcgagttagttgtttcg
cttcgagttggtatggaaaaggaccgcaatcaattgcttcgtgaacttgttgatgtacag
tatggacgtaatgatattgattttaagcgtggtacattccgtgtgcgcggagatgtagtt
gaaatcttccccgcatcacttgatgagcattgtattcgaattgaattttttggggatgaa
atagatcgtattcgagaagtaaatgcattaacgggtgaagtattagcagaacgtgatcat
gtagcaatcttcccggcatctcacttcgttacacgtgaagaaaagctgaaggtcgctatt
gaaaatatcgaaaaagaattagaagagcgtttaaaagaattaaatgataacggtaagttg
ttagaggcgcagcgcatagaacagcgaacgcgttatgatttagaaatgatgcgcgagatg
ggcttttgttcagggattgaaaactactcccgtcatttaacacttcgtccagcaggttca
acgccgtatacgcttttagattattttccagaggatttcttaatcgttatggatgagtcg
cacgtatcggttccgcaagtaagagcgatgtataacggggaccaagcacgtaagcaagtg
cttgttgatcatggattccgtctgccatcagctttagataatagaccgctcacgtttgat
gagtttgaagagaaaacgaatcaagttatttacgtttcggcaacgccaggaccgtacgag
ttagagcagtcaccgaaagcaatagaacaaattattcgtccaacagggcttttagatcca
ccaattgatatacgaccaattgaaggacaaatagatgatttattaggagaaatccatgac
cggattgcgaaaaatgaacgtgtattaattacgactttaacgaagaaaatgtcagaggat
ttaacggactatttaaaagatgtaggaattaaagtgaattatcttcactctgaaattaaa
acattagagcgtattgaaattatccgtgatcttcgccttggtaagtttgatgtacttgtc
ggtattaacttattacgagaaggattagatattccagaagtatcacttgtagctatttta
gatgctgataaggaagggttcctacgttcagagcgttcattaattcaaacaattggtcgt
gcggcgcgtaatgcaaacggccgcgttattatgtacgcagatcgcataacgagatcgatg
ggaattgcaattgaagaaacacagcgtcgtcgtagtatacaagaagcttacaatgaaaag
catggtattacgccgaaaacgattcaaaaaggagtacgtgacgttattcgtgcgacaaca
gcagctgaggatacggaaatatatgaagtaacaccagctaagaagatgacgaaaaaagaa
cgtgaaaatacaattgcgaagatggaagcagagatgaaagaagcagcaaaggcattagat
ttcgagcgtgcagctgaattaagagatttactattagaattaaaagcggaagggtga
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