Candidatus Bandiella woodruffii: Bandiella_00113
Help
Entry
Bandiella_00113 CDS
T09675
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bwf
Candidatus Bandiella woodruffii
Pathway
bwf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bwf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bandiella_00113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bwf03021
]
Bandiella_00113
03400 DNA repair and recombination proteins [BR:
bwf03400
]
Bandiella_00113
Enzymes [BR:
bwf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bandiella_00113
Transcription machinery [BR:
bwf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bandiella_00113
DNA repair and recombination proteins [BR:
bwf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bandiella_00113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
gerPA
RnfC_N
Vsr
Motif
Other DBs
NCBI-ProteinID:
WPX96011
LinkDB
All DBs
Position
87644..91744
Genome browser
AA seq
1366 aa
AA seq
DB search
MFNYFNSKDSQGFDSIKISIASPEHIRAWSFGEVKRPDTVNYRTIKPENGGLFCSRIFGP
VKDYECLCGKYKRMKYRGTVCEKCGVEVTTSKVRRERMGHIELATPIVHIWFLRSLPSRI
CTLLDVSLKKIEKVLYYDAYIVNDPGITNFEYGQLLSEEDYYKAVEHYGEDSFKAGIGAE
IIRDMLKNIDLQEEKNNLRADLAKTTSETVRKKIVKRLKLVEDFLESGNKLEWMVLEALP
VIPPDLRPLVMLDGGRFATSDLNELYRRVLNRNNRLSRLIELKAPDIIVRNEKRMLQESV
DALFDNSRKSKVVKAANKRPLKSLADMLKGKHGRFRQNLLGKRVDYSGRSVIVVGSELKL
HQCGLPKRMALELMKPFIYSKLELYGISATIKAAKRIVEEERPEVWDILEEVIKEHPVFL
NRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLESRVL
MMSTNNILSSANGEPVTVPTQDIVLGIYYLSLQFDKQLGEGMAFSSLSEVEHAINAEKLS
IQAKIRFKYKSHDQDAEPVMVETTAGRLFIADLLPKESDVSFDYINKVMTKKEISNLVDI
VYRNCGQKKTVIFSDRLMGLGFKYACQSGISIGKDDIVVPETKKVHLDATFKKIKEYEEQ
YADGLITSGEKYNKAIDEWTRCTDRIAADMMKKLSNQAGDHDEGSGFESLNSIYIMADSG
ARGSSAQIRQLAGMRGLMTKPSGEIIETPIVSNFKEGLNELEYFISTHGARKGLADTALK
TANSGYLTRKLVDVAQDCIVTQEDCKTSTSLLTRAKIENGEVIVPLRELVLGRVLAEDVY
SLAHNTLIARKDTLVDEETMDLLEKNNIETLKIRSVLTCKTEHGVCSKCYGRDLATGQIV
NLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQKIANKSDVVSSHSGTIKLNNAFIINDK
QGSAINMSRNCEVVVIDNAYSEKFRCKVPYGAKIYFKDGDDIRTGNKIAEWDPFTAPIMT
EVSGYASFVDLEDSVSIKEVQDDVTGIISKVIIDAKNTKGSNLRPKIVIKDKDGNPIRLK
NGLEARYFLPVNAIVNVSDNQSVEIGDVLARMPKESSKSRDITGGLPRVVELFEARQPKE
AAILSEIDGYVEYGQDYKFKRRLVVRSKDGETSAEYFIPRGKHITVNEGDYVLRGEMLLE
GHPSPHDILRILGTEAFASYMIDEVQQVYKLQGVKINNKHIEVVLKQMLRKVEITDPGET
TFIVGEHIDKDELEQMNEKAKRENYKPAKAVGVLQGITKASLQTTSFLSAASFQETIKVL
TEAAVSGKEDKLQGLKENVIVGRLIPAGTGFYMNQLKNRHKESEHS
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaactatttcaactcaaaagacagtcaaggttttgatagcataaaaatatcaatt
gcgagtccagagcatataagggcgtggtcgtttggtgaggtaaaaagaccagacactgtg
aattacagaactattaaacctgaaaatggtggtttattttgttcaaggatatttggtccc
gtcaaggattatgaatgtctttgcggcaagtataaaaggatgaaatatagaggaacggta
tgcgaaaaatgcggagttgaggttaccacttcgaaagttagaagggaaaggatgggccat
atagagctggctacaccaatagtacatatatggtttttaagatccttaccctccaggatt
tgcaccttgttagatgttagcctaaaaaagattgagaaagttttatattatgatgcatat
atagtcaatgaccctggtattactaattttgaatatggtcagttgctatcagaagaagat
tactacaaagctgtagaacattatggagaagatagctttaaagctggaataggcgcagaa
atcatccgagatatgttaaaaaatatagatctgcaagaggaaaaaaacaatcttagggct
gatttagcaaaaacaacatcggaaactgttcgcaaaaaaatagttaaaagacttaaatta
gttgaagatttcttagagtcaggtaataaattggaatggatggtgctagaagcacttccg
gttatcccgcctgatttaaggccgttagttatgttggatggtggaagattcgctacctcc
gatttgaatgagctatacagaagggtgctgaacagaaataacagattaagcaggcttatt
gagcttaaggctcctgatattatagtgcgtaatgaaaaaagaatgctgcaggagtctgta
gatgcactgttcgataatagcagaaaaagtaaggttgtgaaagcagcgaacaagaggcct
ctaaaatctttggccgatatgctaaaaggtaaacacggtagatttagacaaaatttattg
ggtaagagggtcgactactctggtaggtctgttatcgtggttggttctgaattaaaacta
catcaatgcggtttgccaaagagaatggcccttgagctaatgaaaccatttatctattca
aaattagagctttacggcatttctgccacaattaaagctgcaaaaagaatagtagaggag
gagagacctgaagtttgggatatcctggaagaagtcataaaagaacatcctgtgttttta
aacagggctcctactttgcacaggcttggtatacaagcttttgaaccgttgttgattgaa
gggaaagctatccagctacatcctttagtatgtgctgcgtttaacgccgattttgatgga
gatcagatggcagtgcacgtaccgctttcaattgaggctcagttggagtcaagggtgtta
atgatgtcgactaataatattctaagctccgcgaacggagagcctgtgacagtacctacg
caggatattgtgttgggcatatattatctgtctttgcagtttgacaagcagttaggtgaa
ggtatggctttctctagcttaagcgaagtagaacatgcgattaatgctgaaaaactctct
atacaggccaagattaggttcaagtataaaagtcatgatcaagatgctgagcctgtgatg
gtagagacaactgctgggaggttgtttatagctgatcttttaccgaaagagtcggacgtc
agctttgattatatcaataaggttatgacgaaaaaggagatatcaaaccttgtggatatc
gtgtacagaaattgcgggcaaaagaaaacggtaatattttctgatcgtttgatggggctt
ggtttcaagtatgcctgccaatctgggatatcaataggtaaagatgatattgttgtacct
gaaacgaagaaggtacatctggatgctacattcaagaaaattaaagagtacgaagaacaa
tatgctgatggactaattacatctggagagaaatacaataaagcaatagacgaatggact
aggtgtacggacaggatcgcagctgacatgatgaaaaaattgtctaatcaagctggtgat
catgatgagggtagtggttttgagtcccttaatagcatatacattatggcagattcaggt
gccagaggttcttcagcacaaattaggcagcttgctgggatgagaggtttgatgactaag
ccatctggagaaattatagaaacgcctattgtatctaactttaaagaaggtctaaacgaa
ttggaatattttatttcaactcacggtgcaagaaaaggtttggcagatacagcgcttaaa
acagctaactctggttatttaaccagaaaattggttgatgtagcgcaagactgtatagta
actcaagaagactgtaagacgtctacttctcttctaacgagagcgaagattgaaaacggt
gaggttatcgtaccgttaagagaacttgtacttgggagagtattggctgaggacgtttat
tctttggctcataacacactcatagcacgtaaagatacactggttgacgaagaaaccatg
gatcttctagaaaaaaataatatagaaaccctaaaaataaggtctgtcctaacatgtaaa
actgagcacggcgtgtgtagtaaatgttatggcagggaccttgcaactggacaaattgtg
aatttaggtgaagctgtgggagttatagctgcgcaatcaattggtgagcctggaactcag
ctaaccatgagaactttccatattggtggtgccgcacagaaaatcgctaataagtctgac
gttgtttcttctcactccgggacaataaaactcaacaatgcgtttatcatcaatgacaag
cagggtagcgcaataaatatgagcagaaactgtgaagtagttgtgatagacaatgcctat
agcgaaaaatttagatgtaaggttccatacggtgcaaaaatctattttaaagatggagat
gatatcagaactggaaacaagattgcagagtgggatccatttactgcacctataatgact
gaagtatctggttatgcatcttttgtggacttagaggattcggtttccattaaagaagtt
caagacgatgtaactgggataatcagtaaagttatcatagatgctaaaaatactaagggc
tctaatttaagaccaaaaatagttattaaagataaggacggtaatccaataagactaaag
aatggtttagaggcgaggtacttcttacctgtgaatgctatagttaatgtgtcggacaat
caaagtgtagagattggtgatgtgttagctagaatgcctaaagaatcttcaaaaagtagg
gatattaccggtggtttacctagggttgttgagttgtttgaagcacgtcaacctaaagaa
gctgctatcctaagcgaaatagacggatatgttgaatatggtcaagattataagtttaaa
agaaggcttgtggttagatcaaaagatggagaaacaagtgctgagtattttattccaaga
ggtaaacatatcaccgtcaatgagggagactatgttttaagaggggagatgcttttagaa
gggcatccatcaccacacgatatattacgtatacttggtaccgaagcatttgccagctat
atgattgatgaggttcagcaagtttataaactgcagggggttaaaatcaataacaaacat
atagaagtagtcttaaaacagatgttgaggaaagttgaaattactgacccaggtgaaaca
acgtttatagtcggggagcacatcgataaagatgagctggaacaaatgaatgagaaagct
aagagagagaattacaagccagctaaggcagttggtgtgttgcaaggaataaccaaggct
tctcttcaaacaacctcgttcttatcggctgcttcgttccaagagactattaaggtactt
acagaagctgcggtttctggtaaagaggataaacttcaaggtctaaaggaaaacgtgata
gttggaagacttataccagctggtacaggtttctatatgaatcagttaaaaaataggcac
aaagagagcgagcattcttaa
DBGET
integrated database retrieval system
