Candidatus Bandiella euplotis: Bandiella_01004
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Entry
Bandiella_01004 CDS
T09675
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bwf
Candidatus Bandiella euplotis
Brite
KEGG Orthology (KO) [BR:
bwf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Bandiella_01004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bwf03021
]
Bandiella_01004
Transcription machinery [BR:
bwf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Bandiella_01004
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4168
HTH_AraC
CNTF
Motif
Other DBs
NCBI-ProteinID:
WPX96870
UniProt:
A0ABZ0UPQ9
LinkDB
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Position
complement(728134..730044)
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AA seq
636 aa
AA seq
DB search
MQQVHTKLKDTKLHEKLQEYIKIGKISSEALDKIIPQDTTPEVINAVLSFLDESGITVVT
PVATDQDLDVRLPGEVDGAEDMDGFETSSSGLDSSINNDDPVRMYLKEMGYKVLLTREGE
VGVAKKIEDSRNKKIYYLIQTPTILKEMQDWYDDILTGKKLLREIIDIDATANSDGTSQT
FDHQKEDINTSDNVEESEDSEEVEDFDDGRSFISAMENDLKPKILNKLSEISEYSRELLK
SYHAINALKKLSAGALKKKDDMEISTITKAQEEYIAKITELLCDIRLNEQYIESVFTKLK
NINKAIIQIESELIKVAVKANFNKINFLEGYNKIKLENDWFESFKAQGVKYNQLFEDNTS
FFTKTEQKFNQIVEQCGLSISAFKELFHNVQKWERAVNKAKKEMIEANLRLVISIAKKYA
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKIVRTSKQLAHDLGREPTSEEIAEQLSIPVEKVKKVLKISKEPMSLENQLGDDE
GSTLGDFIEDPNAIKPIDSAVHSNLREITTKVLATLTTREEKVLRMRFGISMETDHTLEE
VGKQFDVTRERIRQIEAKALRKLRHKTRAKKLSSFV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagtccacaccaagttaaaagatacaaaacttcatgaaaaactacaggaatac
atcaaaattggaaagatatcatcagaggctttggacaagataattccccaagataccacg
cctgaggttataaatgcggtattatcgtttttagatgaatctggtataacagttgtaact
ccggttgccactgaccaggatttggatgttagattgccaggtgaggttgatggagctgag
gacatggatggttttgaaacaagctcttcaggtttagactctagcattaacaacgatgac
ccggtgcggatgtatctaaaagaaatgggatacaaagtgttgttaacacgagaaggcgag
gttggggttgccaagaaaattgaagatagtagaaataaaaaaatatattatttgatccag
accccaactattctaaaagagatgcaagactggtatgatgatatattaacagggaaaaag
cttctcagggaaattattgatatagatgctacggccaatagcgatggtacatcgcaaact
tttgatcatcaaaaagaagatataaatacaagtgataatgttgaggagagtgaagatagc
gaggaagtcgaggattttgatgatggaagaagttttatttctgcaatggaaaacgattta
aagcctaaaattttgaataagctgtcagaaatatctgaatatagcagagaattgctgaaa
tcttaccatgccatcaacgctttgaaaaaattaagtgctggggcgttgaagaagaaagac
gatatggaaatttcaaccattactaaagcacaggaagagtacatagcaaaaattaccgaa
ttattatgcgatataaggctaaatgagcaatatatagaaagtgtttttaccaagctcaaa
aacatcaacaaagctattattcaaattgaaagtgagttgataaaagttgccgttaaagcc
aattttaacaaaattaacttcttagaggggtataataaaataaaattagaaaacgactgg
tttgagtcttttaaagcccaaggtgttaaatataatcaactatttgaagataatacctcg
tttttcaccaagaccgagcaaaaatttaaccagattgtggaacagtgtgggctttctatt
tcagcttttaaagagctttttcataacgtgcagaaatgggagagggctgttaataaggca
aaaaaagagatgatagaggctaatttaagacttgttatatcaattgccaaaaaatatgcc
aatcgtggattgcagtttttggatttgatccaagaaggaaatataggacttatgaaagct
gtagataagtttgaatatcgcagaggttataaattctcaacttatgcaacttggtggatc
agacaagcgattacccgttcaatcgctgatcaagcccgaaccattaggataccagtacat
atgattgagaccatcaataaaattgtacgtacatccaagcaattggcgcatgatttaggc
agagaaccaacctctgaagagatagctgagcagctctccatccctgttgaaaaagtgaaa
aaagtgctgaaaatttcaaaagaaccaatgagtttagagaatcagcttggggatgatgaa
ggaagcacgttgggtgattttatcgaggacccaaatgctatcaaacccatagactctgct
gttcattcaaatcttagggagataacaacaaaggtgttggcaacattaactacaagggaa
gagaaggttcttcgaatgaggtttggaattagtatggaaacagaccacacattagaagag
gtgggcaaacaattcgatgttacaagagaaagaattagacagattgaggcaaaagcgctt
agaaaattaaggcataaaacaagggcgaaaaagctaagcagttttgtgtaa
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