Bacillus weihaiensis: A9C19_19635
Help
Entry
A9C19_19635 CDS
T04822
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bwh
Bacillus weihaiensis
Pathway
bwh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A9C19_19635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bwh03400
]
A9C19_19635
Enzymes [BR:
bwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A9C19_19635
DNA repair and recombination proteins [BR:
bwh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A9C19_19635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APH06721
UniProt:
A0A1L3MWJ5
LinkDB
All DBs
Position
complement(4124392..4127922)
Genome browser
AA seq
1176 aa
AA seq
DB search
MNSLQHYFYDNDDFKTIVSGIEEGLKEQLVAGLSGSARTVFTSALYHDVKKSILIVTHNL
FQAQKVYEDLTNLLKDHVYLYPVNDLIASEVAIASPELKAQRIEVLNKLIEGQPSIVVAP
VAGVRRLLPPKALWKEKQFTLSVGQDIELDEYTNQFVSLGYERVDMVNAPGEFSVRGGII
DLYPLTEENAVRIELFDTEIDSIRTFNIENQRSIEMLKTVTIGPAVEMLLNEESRVRCIK
AVEDGLAKNLKNMKNDQQKELLVENIEYDLEKLRTNQYSQDIFKFSSLFYEQPASLLDYM
SDDSMIILDEISRIHETYEQLEREEAEWYTNLLEEGKILKDVKISHSYLEVMSKSKQPLI
YLSLFLRHVPHTSPQNILNLSCKQMQNFHGQMHLLKTEIDRWQKAQYAIVFLGVNEERTK
KLEQVLEDYEIKATILKTTDFIRGGSTLILEGDLQTGFELPMQKLAVITEEELFKKRVKK
QVRRQKLSNAERIKSYSELEVGDYVVHVNHGIGKYVGIETLEIKGIHKDYLNIKYQGSDQ
LYVPVEQIDQVQKYVGSEGKEPKIYKLGGNDWRRVKKKVESSVQDIADDLIKLYAEREAS
EGYAFSPDGEMQKEFELAFPYQETEDQIRSIQEIKKDMERLRPMDRLLCGDVGYGKTEVA
IRAAFKAVADGKQVALLVPTTILAQQHFETVRERFQDYPINVGLLSRFRTRKEINETTKG
LANGTVDMVIGTHRLLSKDIQYKELGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGVLVRESIEREMARGGQVFFLYNR
VEDIERKAEEISMLVPDARVTYAHGKMTENELESVMLSFLEGEYDVLVSTTIIETGVDIP
NVNTLIVNDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQTDQPKEKPIDV
EIDLQVDAYLPQDYITDNRQKIDMYKRFRSISSIQELEELQEEMIDRFGEYPIEVSYLFH
IAKIKVFAMQERVELIKQDKEVISILVEEAASNKIDGQKLFDLSNKYQRTVGLGMEGSRL
KMTISTKGHTVDQWLTIITELLNGLSQVKKEEISVK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaacagtttgcagcactatttttatgataatgatgattttaagacaatcgtatcaggt
atcgaggaaggtcttaaggagcagttagtagcgggtctatccggatcagcgagaacagta
tttacttctgcattataccatgatgtgaaaaaatcaattttaattgttactcataatctt
tttcaagcccagaaggtatacgaagatttaacgaatttattaaaagatcatgtttatctt
tatcctgttaatgaccttattgcatcagaggttgctatcgcaagtccagagctaaaggct
cagaggatagaggttttaaataaactaattgaaggtcagccttctatcgttgtagcacca
gtagcgggtgtaagaagattattgccacctaaagcattatggaaggaaaagcagttcact
ctttctgtaggacaggatatagagcttgatgaatatacgaaccaatttgtttcattagga
tatgagcgcgttgatatggtaaatgcaccaggtgagtttagtgttcgtggtggaattatt
gacctttatcctttaacagaggaaaatgctgtaaggattgaattgtttgatactgaaatt
gattctattcgtacgtttaacatagaaaatcaacgttcaattgagatgcttaaaacagtc
acgatcggtccagctgttgaaatgctattaaatgaagaatcaagagtaagatgtataaag
gcagtggaagatggactagcaaagaacttgaagaacatgaaaaatgaccaacaaaaagag
ttgctggtcgaaaacattgagtatgacttagagaagttaaggacgaaccaatattcacaa
gatattttcaaattttcatcgctcttctatgaacagcctgctagtttactagactacatg
tcagatgattcaatgatcatcttagatgaaattagtagaattcatgaaacgtatgaacag
ctagaacgtgaagaagcagagtggtatacaaatttactggaagaaggaaaaattcttaag
gatgtaaaaatctcacattcctatttggaagtaatgtcaaagtcaaagcaaccactcatt
tatttatctttatttctgaggcatgtaccccatacaagccctcaaaatatattgaatttg
tcgtgtaagcaaatgcaaaattttcacggacaaatgcacctcttaaaaacagaaattgat
cgttggcaaaaagctcaatatgccattgtgtttttaggtgtaaatgaagaacgtacgaag
aaattagagcaagtcttagaggattatgagataaaagccactatcttgaaaacaacggat
ttcataaggggtggaagtacactcatactggagggggatctccaaacaggatttgaactt
cctatgcagaagcttgcggtcattacggaagaagaactatttaaaaaacgagtaaaaaaa
caggtgcgtagacaaaagctatctaatgctgaaagaataaaaagctattcagagttagag
gttggagactacgttgttcacgttaatcatggtatcggaaagtatgtaggaattgaaact
cttgaaattaagggaatacataaggattacttaaatatcaagtaccaaggtagtgatcaa
ttatacgttcctgtagaacaaattgaccaagttcaaaaatatgtgggctcagaaggtaag
gagccgaaaatatataaactgggtggtaatgattggcggagagtgaagaagaaggttgaa
tcatctgttcaagacattgcggatgatttaattaagctgtatgcagagagagaagcaagt
gaagggtatgcgttttcaccagacggggaaatgcaaaaagagtttgaactagctttccct
tatcaagaaactgaggaccaaatacgttctattcaggaaatcaagaaagatatggagcgt
ctacgtccaatggatagactactatgtggagacgttggctatgggaagacagaggttgca
atacgtgcagcttttaaagcagtagcagatggtaagcaggtagccttacttgttccaacg
acaattcttgctcagcagcattttgaaacagtccgtgaaagattccaagactatccgatt
aatgttgggcttctcagtcgttttagaacaaggaaagaaattaatgaaacgaccaaaggt
ttagcaaatggaacggtagatatggtcattggtacacataggctactttctaaggatatt
cagtataaagaattaggtcttcttattattgatgaagaacaacgctttggtgttactcat
aaggaaaaaatcaagcaacttaaagcgaatgtagatgtgctaactttaacggcaacacca
attccaagaacactgcatatgtctatgcttggtgttagggacctttccgttatcgagacc
cctcctgaaaatcgtttcccagttcaaacgtatgttgttgaatataacggtgtgctagtc
agggagtctattgaaagagagatggctcgtggaggtcaggtgttcttcttgtataaccgt
gtagaggatattgagaggaaagcagaagaaatttcaatgctagtacctgatgcgcgtgta
acgtatgcccatggaaagatgacagagaatgaactagagtctgttatgctaagcttttta
gagggagaatatgatgttcttgtgagcacaaccattattgaaacaggagtggatatccct
aacgtaaacacattaatcgtcaacgatgcagataaaatgggcttatcacagctttatcag
ctacgaggacgtgtgggtcgttctaatcgagtggcgtacgcatacttcacgtatcgaaaa
gataaagtgttaacagaggttgctgagaagagactgcaggcgattaaagaatttacggaa
ttaggatcaggtttcaagattgcaatgagagacttatcaattcgaggtgcaggtaactta
ctaggtgcccaacaacatggctttatcgactctgtaggttttgatttatattctcaaatg
ctaaaagaagcgattgaagaaagacaaacagatcagccgaaggaaaagccaattgatgtg
gagatagacctacaagtcgatgcttatcttccacaagattatattactgataatcgtcaa
aaaattgatatgtataaacgctttaggtcaatctcaagtattcaggagcttgaagaatta
caagaagaaatgattgaccgtttcggggaatatccaatagaagtgagctatcttttccat
attgcaaagatcaaagtatttgctatgcaggaaagagtggaattgattaaacaagataaa
gaggtaatctccattcttgtagaggaagcagcaagtaataaaatcgatggtcaaaaatta
tttgatttaagcaataaatatcaacgtacagtcggtcttggtatggaaggttcaaggtta
aaaatgacgatttcaacaaaagggcacacggtagatcagtggctaacaatcatcacggaa
ttattgaatggattatctcaagtgaaaaaagaagaaatctcagtaaaatag
DBGET
integrated database retrieval system
