Bilophila wadsworthia: WCP94_003556
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Entry
WCP94_003556 CDS
T11092
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bws Bilophila wadsworthia
Pathway
bws03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCP94_003556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bws03400
]
WCP94_003556
Enzymes [BR:
bws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCP94_003556
DNA repair and recombination proteins [BR:
bws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCP94_003556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
MalF_P2
RecG_dom3_C
AAA_16
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
XUR86916
LinkDB
All DBs
Position
complement(2645601..2649050)
Genome browser
AA seq
1149 aa
AA seq
DB search
MYTDVMTEIARLKAGRIHVARAGLATQARLCVDMLQQGRGMAWVVKNRDELLTARALMRL
FSPELSSGDFLPDAFDKGGWTSLPPFSPRSANREGWTERLAALYALRSGQAKGLILTADN
LLPKLVPLDFFENREVTLIRGEDVSLDMILEQAVEWGYERVSMVSNPGEIARRGDILDIM
PPGYDKPIRLDFFGDLIEEIRLFDPVSQRSKANLSEVRVLPVSPIRQSPADQAKMQARWK
SLFQKNMLTENERFGLTRLQEQGDFRLLPGCCYDTATNLEAWLPADTVWVLPGLADLRDM
LSSAERLWTEAFEAQDVEGRPQPQRLAMREASDVESVCERFACVHAEPLVMGIAKGIHDL
PERSLSSFEELFPSTAEQDRPWQTLVQALKRWQNDKRQTILCFASEKSRTKFLNLASQDG
LSPLLRYSGEQHGLFALVAPFRVGAELIWDESLILGEDLLQPHAEKSRRVPTGAFKGLDR
YDELKPGDLLVHRDYGIARFGGLLRMETGSTANDFLLLHYSGDDRLYVPVDRLSLIQRFK
GGGEAQPSLDRLGGGAWQSGKEKARKAIEKIAEDLIEMYAWRKVAKGFRYPPLGELYREF
EASFGFEETPDQAKAIQDVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVA
LLCPTTVLAEQHYQTFRSRLSGFALNVGLLSRFVSSAKQKEVLKAAASGQIDILIGTHRL
LSDDVVLPNLGLLILDEEQRFGVRHKEKLKKIKKNVDALTLTATPIPRTLQLSMSGVREL
SVIETAPPERKPVSTALLERDKATLRQVIERELAREGQVFWVHNRVQGLERVVEFVKELA
PNARIGMAHGQLPEKKLEETMHAFWHGELDILVCTAIVESGLDFPRANTLIVDQAHLFGL
GQLYQLRGRVGRSDRQAFACFVVSDLERLPAATKERLRIILDMDYLGAGFQVAMEDLRLR
GAGNILGEVQSGHMGRVGLELYLEMLEQAVNKIKNGGVSLQIETELNLGLTAHIPEDYIT
DGRERLRWYKRLSAAPDAQARQELELELRDRFGILPQPLEIFMAVLALKQFLSGAQALKA
DVYEDRLRVLWDEKQNAIAPEKLVPFLSAQKGNAKLIPPSSLELKLDMQLPTPRRLDAAR
LALGTLLTD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtatacagatgtgatgaccgagatcgcccgtctcaaggctgggcggatacacgttgcg
cgcgcggggctggccacgcaggcgcggctttgcgtggatatgctccaacagggccgtggc
atggcttgggtcgtaaaaaacagggatgagttgcttaccgcccgcgctttgatgcggctg
ttctctcccgagttgtccagcggcgactttttgccggatgcctttgataagggcggctgg
acgtctctgccgccgttttcgcctcgctcggccaaccgtgagggctggacggaacgcttg
gccgctctgtacgccttgcgcagtggacaggccaaagggcttatcctgaccgccgataac
ctgctccccaagttggtgcctctggatttcttcgagaaccgggaggttaccctcatacgg
ggtgaagacgtttcgttggatatgatactcgaacaggcggttgaatggggctatgagcgt
gtttccatggtctcgaatccgggcgagatcgccagacgtggtgatattctcgacatcatg
cctcccggctatgataagcccatacgtcttgatttttttggggatctcatagaggagatc
cgccttttcgatcccgtgagccagcgttcgaaggcaaatctttctgaagtacgtgttctt
cccgtgtcacccattcgacagtcgcccgctgaccaagcgaagatgcaggcacgctggaaa
agcctgttccagaaaaacatgctgaccgaaaatgaacggttcgggttgacccgcttacag
gaacagggcgatttccgcttattgccgggttgctgctatgatacggcgaccaatctggaa
gcatggctccctgccgataccgtatgggttctgccggggctcgccgatcttcgtgatatg
ttgtcctcagcggaacgtctttggacggaagccttcgaagcgcaggatgtggagggccgt
cctcagccgcagcgtttggccatgcgcgaagcaagcgatgtggaaagcgtttgcgagcgg
ttcgcctgtgttcacgcggaaccgctggtgatgggcatcgccaaaggaatccatgatctg
ccggaacggagcctttcttcgttcgaggagctgtttccttcgactgcggagcaggatcgc
ccttggcagacgctcgttcaagcactgaaacggtggcagaacgacaagcggcagacgatt
ttgtgctttgcttccgaaaagagccgtacgaaatttttgaatctggcctctcaggatggc
ttgtcccctttgctgcggtattccggggaacagcatggcctgttcgctttggtggcgcca
tttcgggtcggtgctgaactgatttgggatgagagcctcatactcggggaagatctcctc
cagccacatgcggagaaaagccgccgcgttcctacaggagccttcaaggggcttgatcgg
tatgacgagttgaagcccggcgacttgctggtccatcgggattacggcattgcccgcttt
ggtgggctgttacgcatggaaacgggcagcactgccaacgatttcctgctgctgcattat
tccggagatgatcggctttatgttcctgtggatcgcctttccctcatccaacgctttaag
ggcggaggagaagcgcagccgtcgctggatcgtctgggcggcggagcctggcaatccggc
aaggaaaaagcccgcaaggctatcgaaaaaatcgccgaagacctgattgaaatgtatgcg
tggcgtaaagtggccaaggggttccggtatcctcctcttggggagttgtaccgtgaattt
gaagcgtccttcggcttcgaggaaacgcctgatcaggcgaaagccatacaggacgtcctg
gctgatatggaaaaacccgaacctatggatcggcttgtgtgcggagacgtggggttcggc
aaaacggaggttgctctgcgggcggcgttcagagccgcctcggaagggcgtcaggtcgca
ctgttgtgtcccacgacagttcttgccgagcagcattaccagaccttccgctcccggctt
tcgggctttgcgctcaatgtcgggctgctgagccgcttcgtttcttcggccaagcagaaa
gaagtgctcaaagcggcggcttccggacagatcgacatcctcatcggtacgcatcggctc
ctttcggacgatgtggttctcccgaatcttggcttgcttatccttgatgaggagcagcgt
ttcggcgttcggcacaaagagaaacttaaaaaaatcaaaaagaacgttgatgcgctcaca
ttgacggccactccgattccccggacgcttcagttatccatgtccggagtccgcgaactt
tcggtcatcgagacggcccctcctgagcgtaaacccgtttctacggcgctgctggagcgg
gacaaggcaacacttcggcaggtgattgaacgggaactggcccgtgaggggcaggttttt
tgggtccataaccgggtgcaggggctggagcgggtcgtcgagttcgtcaaggaactggct
ccgaatgcgcgtatcggcatggcgcatgggcagctgccggaaaagaagcttgaagaaacc
atgcacgcattttggcatggcgagttggacattctggtttgtaccgccattgttgaatcg
gggctggacttccctcgggccaatacgttgatcgtcgatcaggcgcatcttttcggtctg
gggcagttgtaccagctgcggggcagggtggggcggtccgatcggcaggcttttgcctgt
ttcgttgtttctgatctggagcggttgccggctgcaacaaaagaacgtttgcgcattatc
cttgatatggattacttgggcgcgggcttccaagtcgcgatggaagatttgcggttgcgt
ggcgccggaaacattcttggtgaggttcagtccggccatatgggacgtgtggggcttgaa
ctgtatcttgaaatgctcgaacaagccgtcaataagatcaaaaacggcggcgtatcatta
cagattgaaacggaactcaatttggggcttaccgcccatatccccgaggactatattacg
gatggacgggaacgcctgcgttggtataagcggctatccgctgctccggacgctcaggcc
cgccaggaacttgaactcgagcttcgagaccgctttggcattttaccgcaaccattggaa
atctttatggctgtactggcactgaagcaattcctgagcggggctcaagccttgaaggcg
gacgtatacgaggatcggctccgtgtcctctgggatgagaagcagaacgccatcgcaccc
gagaaactggtgccgttcttgagtgcgcaaaaaggcaatgccaagttgattcctccatca
agccttgaattgaagctggatatgcagttgcccaccccgcgcaggcttgatgccgccaga
ctggcgctggggacacttctgacggactga
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integrated database retrieval system
