Paraburkholderia xenovorans LB400: DR64_2816
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Entry
DR64_2816 CDS
T03290
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bxb
Paraburkholderia xenovorans LB400
Pathway
bxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR64_2816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxb03019
]
DR64_2816
Enzymes [BR:
bxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DR64_2816
Messenger RNA biogenesis [BR:
bxb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DR64_2816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
P-loop_SecA
CMS1
DegT_DnrJ_EryC1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AIP30681
LinkDB
All DBs
Position
1:complement(3076217..3077782)
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AA seq
521 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK
DIEKLIKRPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGGGGRSPRQGQGAPKRDDARRD
GAGSAKPAQRSGQRPANGQQQPKPQGAKPAGNGGQPRRDGQRHDDRPRAVAHEGSAAQHA
PRKPQAAKPQGGNPGALLGGTKPRNDAPRGGQPTRSGQRGR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcttgtccgaaccgttggtccgcgctgtacacgaacttggc
tacaccacgccgactccgatccagacgcaagcgattcccgctgtgctcaacggcggcgac
ctgctggccggtgcgcaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgtctgaactcctcgcccgccgttgcgaacggttcgggcaagcgcgccgtgcgcgcg
ctgatcctcacgcccacgcgtgaactggccgcgcaggtggaagaaagcgtgcgcgcctac
ggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcag
atcggcgcgttgcgcagcggcgtggatatcgtcgtcgccacgccgggccgtttgctcgat
cacatgcagcagaaaaccatcgacctgtcgcatctcgagattctcgtgctcgacgaggcc
gaccgtatgctcgacatgggcttcatccacgacatcaaacgcgtgctcgccaagctgccg
ccgaagcggcagaacctgctgttctcggccactttctccgacgagatcaagacgctcgcc
gacaatctgctcgactcgccggcgctgatcgaagtcgcacgccgcaacacgacggcggaa
acggtcgcgcagaagattcacccggtggaccgtgacaagaagcgcgagttgctcacgcat
ctgatcaaacagcacaactggttccaggtgctggtgttcacgcgcaccaagcacggcgcc
aaccgccttgccgaacagttgaccaaagacggcatcagcgccctggcgattcacggcaac
aagagccagtcggcccgtacccgcgcgctcgccgagttcaaggacggcacgctgcaggtg
ctggtcgcgaccgacatcgccgcgcgcggcatcgacatcgatcaactgccgcacgtggtc
aactacgatttgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgc
gcaggcgctaccggcgaagcggtctcgctggtgtgcgtcgacgaactgcaactgctgaag
gacatcgagaagctgatcaagcgtccggtgccgcaggaagtggttgccggtttcgaaccg
gacccgaccgcgaagccggagccgatcctgcgccgcggccagggtggtggcggcggcggt
ggtggccgctcgccgcgtcagggtcaaggcgcaccgaagcgtgacgatgcaaggcgcgat
ggcgccggttccgcgaaaccggcgcaacgttcgggtcaacgtccggccaacggtcaacag
cagccgaagccgcagggtgcgaagccggccggcaacggcggtcagccgcgtcgtgacggc
cagcgccacgacgaccggccgcgcgccgtcgcgcatgaaggcagcgccgcgcagcatgcg
ccgcgcaagccgcaggccgcgaagccgcaaggcggcaatccgggtgcgttgctgggtggc
acgaagccgcgcaacgacgcgccgcgcggtggccagcccacgcgcagtggtcagcgcggg
cgctga
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integrated database retrieval system
