Paraburkholderia xenovorans LB400: DR64_3225
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Entry
DR64_3225 CDS
T03290
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bxb
Paraburkholderia xenovorans LB400
Pathway
bxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DR64_3225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxb03019
]
DR64_3225
03009 Ribosome biogenesis [BR:
bxb03009
]
DR64_3225
Enzymes [BR:
bxb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DR64_3225
Messenger RNA biogenesis [BR:
bxb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR64_3225
Ribosome biogenesis [BR:
bxb03009
]
Prokaryotic type
rRNA processing factors
DR64_3225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Phlebovirus_NSM
Motif
Other DBs
NCBI-ProteinID:
AIP31259
UniProt:
Q13VK4
LinkDB
All DBs
Position
1:complement(3523746..3527036)
Genome browser
AA seq
1096 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRPVAAPAPVAVTPASGGFIGWLKNLFGMQPAAPAPAAPATTDKQTRPQRSERT
ERGERTGERGGERNRNRRGGAGGRDAAGRGEGTTATGGRPVQGQQSSQRREEREPREARE
GREAREPRGNREPREAREGREPRETRETREPRESREGRENRDRDNRGNERAETVEGAPRA
ERGERPERGERRERGERAERGERRKPQAEAADALTQSDAQTAEELAQNQTALGENGAPVD
QEAVAREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGENAAVTDEAQVLTARQPV
ERKTEANEAKDVTPVEVVVAAVATETAVVSELHAATETPALAVEKAAKAEAVVPVAQAPA
ATAVAEPVAETVAPAAAAPVEAAQAVPAASETVSPAEPVARVEAPAQAEPEAPAVTPSPV
EAHAAPAPIETAAPAAVVEAQAIQPAPHAGIVEAQPVVAGAATVVEPVVAESAPVAAVAP
QAPQPARHDAVSAEALKPVLEQAGLVWVNTDADKLRAAQEAAAQTVKPARVVRERKSLPP
LDSAPMQQVETGKHAQ
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaacgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaagggcatcattacccgcatcgagccttcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtatttccgcgac
ggcgtcgacatgcgctcggcgcgcatccaggacgccctccgtgaaggccaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctcaccaccttcatctcg
ctcgccggccggtatctggttctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgaccgtcaggaacttcgcgaaaccatggcgcagctgcaattgccg
gaaggcatgagcatcatcgcgcgcacggccggcattggccgcagcgccgaagagctgcag
tgggacctgaactacctgatgcaattgtggcgcgccatcgaagccgcgtcgcaaagcggt
tcgagcggccagccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactatttccagccggatatcggcgaaatcctgatcgacaccaccgaaattcatgaccag
gcacgcgccttcatggatatcgtgatgccggacaatgtcagcaaggtgaagcggtatcac
gacgacgtgccgctcttctcgcgcttccagatcgaacaccagatcgaaaccgcgtattcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgaccacaccgaagcactggtc
gcgatcgacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagctgccgacgaagtcgcccgccagttgcgcctgcgcgatctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaagacgcgctcaagcacgaccgtgcgcgcgtccagatgggcaagatctca
cgtttcggcctgatggaactgtcgcgtcagcgtctgcgtccggcgctgtccgaaggcagc
catgtgacctgcccgcgctgcaacggcacgggtcatattcgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcaatgaaggaaaacaccgcggcaattcat
tgccaggtgccggtcgaagtcactgccttcctgctgaacgaaaagcgcgctgaaatcaac
aagatcgagtcgcgtttcaaagtcaatgtcgtcctgattccgaacaagcatctcgacacg
ccgcattacaagctcgagcgtctgcgtcacgacgacgcgcgcctcgacgaaccgcgcgct
tcgtggaagatggccgaagaagcggcccgcgaactcgaatcggaaaccggctacagcaag
cgcaccgaagaagtgaagccgaagcaggaagcggcggtcaagggcatcacgcctgaaaaa
ccggcgccgagcgcgccggttcgaccggtcgccgccccggctccggtcgcggtcacgccg
gcgagcggcggctttatcggctggttgaagaatctgttcggcatgcagccggcggcaccg
gcgcccgctgcgccggctacgaccgacaaacagacgcgtccgcagcgcagcgaacgcacg
gagcgcggtgagcgcaccggcgaacgcggcggcgagcgcaaccgcaaccgccgtggcggc
gcaggcggccgcgacgcagcgggccgtggcgaaggcacgaccgccaccggcggccgtccg
gttcagggccagcagtcgtcgcagcgccgcgaggaacgcgaaccgcgtgaagcgcgcgaa
gggcgtgaagcacgcgagccgcgtggcaaccgtgagccgcgtgaggcccgcgaaggccgt
gaaccgcgcgaaacgcgcgaaacgcgtgaaccacgtgaaagtcgcgagggccgcgagaac
cgcgatcgcgacaaccgcggcaacgagcgtgcggaaaccgtcgagggcgcaccgcgcgcc
gaacgtggcgagcgtccggagcgtggcgaacgccgtgaacggggcgaacgtgccgagcgc
ggcgaacgccgcaagccgcaagcggaagccgcggacgcactgacccagagcgacgcgcaa
acggcggaagaactggcgcaaaaccagaccgccttgggcgaaaacggcgcgccggtcgat
caggaagccgtggcgcgtgaaggtgaagagcgccgccgccgccgtcgcggccgtcgtggc
ggccgtcgcgagcgcgaagaagacgtgaacggcaacctggcagcggacgtcgcggaagct
gaaggcgagaacgccgccgtgaccgacgaagcgcaggtgctcaccgcacgtcagcccgtc
gagcgcaaaacggaagccaacgaggcgaaggacgtgacaccggtggaggtggtggtcgct
gctgtcgcgactgaaaccgccgtggtcagcgaactgcacgctgcgaccgaaacgccggct
ctcgccgtcgagaaggcagcgaaggcggaagcggttgtcccggtggcgcaagcgccggcg
gctacggcagtcgccgagccggttgccgaaacggttgcgccggccgctgccgcgccggtc
gaagccgcgcaagctgtgccggccgccagcgaaacggtttcgccggctgaaccggtcgca
cgtgtcgaagcgccggctcaggccgagcccgaagcgccggcagttacgccgtcgccggtc
gaagcgcacgccgcgccggctccgatcgaaaccgcggctccggcggcggtggtcgaagca
caggccattcagcctgcgccgcatgccgggatcgttgaagcgcagccggtcgtggccggc
gctgcaacggtggtcgagccggtagtggccgaatccgcgccggtagccgccgtcgcgcca
caggcaccgcagccagcacgtcatgacgccgtgtcggcggaagctctgaagccggtgctg
gaacaagccggtctcgtctgggtgaacaccgacgccgacaagctgcgtgcggctcaggaa
gcggctgcgcagaccgtcaagccggctcgcgtagtacgcgaacgtaaatcgttgccgccg
ctcgacagcgcgccgatgcaacaagtggaaacgggcaagcacgcgcagtaa
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