Paraburkholderia xenovorans LB400: DR64_3248
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Entry
DR64_3248 CDS
T03290
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
bxb
Paraburkholderia xenovorans LB400
Pathway
bxb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
DR64_3248 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxb03019
]
DR64_3248 (rnc)
03009 Ribosome biogenesis [BR:
bxb03009
]
DR64_3248 (rnc)
03036 Chromosome and associated proteins [BR:
bxb03036
]
DR64_3248 (rnc)
Enzymes [BR:
bxb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
DR64_3248 (rnc)
Messenger RNA biogenesis [BR:
bxb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DR64_3248 (rnc)
Ribosome biogenesis [BR:
bxb03009
]
Eukaryotic type
90S particles
RNase
DR64_3248 (rnc)
Prokaryotic type
rRNA processing factors
DR64_3248 (rnc)
Chromosome and associated proteins [BR:
bxb03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
DR64_3248 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
AIP29886
UniProt:
Q13VM8
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All DBs
Position
1:3547571..3548857
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AA seq
428 aa
AA seq
DB search
MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKL
DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGAV
FLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA
HNQQFEVECTVPKLEVKVSGSGASRRAAEQAAAKKALDEVMAAAPAMVAKPKRSKSARAA
KNVEPEIVPGVTGVQAALDLRSPDRKSERGAGRGEARAAATAEPAGERPMLGLAAAPLAV
IRAAHVEYSGQDKAERADKAEKAEKPAAHTGDRSTDKAGAAAADKPAEKSAEKPDTKPAD
AKTTETRAAEAKVAEAKPEAAAARGVDKLRNREATPGAAAPAAGAAAPTEHEPGVADAVQ
TRVADAGH
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcccctatctccgttggaaagccgtctgcgctacgaatttcgcaatgcggaattgctg
cgccaggctttaacgcaccgcagtcacagttccacgcataacgaacggctcgaatttctt
ggcgactccgttctgaattgcgcggtggctgcgcttttgttccaacgcttcggcaaactg
gacgagggtgacctgtcgcgcgtccgtgccaatctggtcaaacagcagtcgctctacgaa
attgctcaggccctcaatatttcggagggcttgcggctgggcgaaggcgagttgcgcagc
ggcggcttccgccgcccctcgatcctcgctgacacgctcgaagccgtgctgggcgcggtg
ttcctcgacggcggcttcgaggccgcccaaacggtcatcaagcgtctttacgtgccgatt
ctcgatcacatcgacccgcgcacgcttggcaaggacgccaagacgctgctccaggagtat
ttgcagggccacaagatcgcgctgcctacttacacggtcgtggctacacatggtgcggcg
cacaatcagcaattcgaagtcgaatgcacggtgccgaagctggaggtgaaagtctccggc
tccggcgcgagccggcgcgccgcggagcaggcggccgccaagaaagcgctcgacgaggtc
atggccgcggcgcccgctatggtcgccaaacccaagcgctcgaaaagtgcccgcgcggcg
aagaacgtcgagccggagatcgtgcccggcgtcactggcgtgcaagccgcgctggatttg
cgcagcccggatcgcaagagcgagcgtggagcggggcgcggtgaagcccgcgcggcggcc
acggccgagccggcaggcgagcgccccatgctgggcctcgcagccgcaccgttggccgtg
attcgcgccgcgcacgtggagtacagcgggcaggacaaagccgaacgcgccgacaaggcc
gagaaagcagagaagccggccgcccacacgggcgacaggtccacggataaagccggagcg
gcagcggcggataaacccgccgagaagtccgctgaaaaacccgatacaaagcctgcggac
gcgaaaacgaccgaaaccagagcggccgaagccaaagtggccgaagccaaaccggaagcc
gctgccgcgcgcggcgtcgacaaacttcgcaaccgcgaggccacgcctggcgcagccgcg
cctgcagcgggcgcagccgcgccgaccgaacacgaacccggcgtagccgacgcggtgcaa
acgcgcgtcgccgacgcgggccattga
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