Paraburkholderia xenovorans LB400: DR64_42
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Entry
DR64_42 CDS
T03290
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
bxb
Paraburkholderia xenovorans LB400
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bxb03009
]
DR64_42 (rimO)
Enzymes [BR:
bxb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
DR64_42 (rimO)
Ribosome biogenesis [BR:
bxb03009
]
Prokaryotic type
ribosomal protein modification factors
DR64_42 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
AIP29711
UniProt:
Q13Z56
LinkDB
All DBs
Position
1:complement(45893..47278)
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AA seq
461 aa
AA seq
DB search
MSATPPIAPIATPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGF
IDEAVQESLDAIGEALNENGKVIVTGCLGAKKSASGSGLIEEVHPKVLAVTGPHALGEVM
QHVHMHLPKPHDPFVDLVPAAGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPV
ADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPIKTRMTDLVGALGELAA
QYGAWVRLHYVYPYPSVDEVIPMMAEGPFKGHVLPYLDVPFQHAHPEVLKRMKRPANAEK
VMERVKKWREMCPDLTIRSTFIAGFPGETEEQFQTLLDFIREAELDRVGCFAYSPVEGAT
ANELDGALPDEVREERRARFMEVAEEVSAKRIAKKVGKTLKVLVDEINADGGIGRTAADA
PEIDGVVYIAPAVKASKRYKVGDFVSVKITGADGHDLWGEV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaccccaccgattgccccgattgccacgccgaaagtcggctttgtctcgctc
gggtgcccgaaagccctggtcgattccgagcagatcatcacccaattgcgcgccgaaggt
tacgagatttccggcacgtacgacggcgcggacctcgtggtcgtcaacacctgcggtttc
atcgacgaagcagtgcaggagagcctcgacgcgatcggcgaagcgctcaacgaaaatggc
aaggtgatcgtgaccggctgcctcggcgccaaaaagagcgcgagcggttcggggctgatc
gaagaagtgcatcccaaggtgctggccgtgaccggcccgcacgcgctcggcgaagtcatg
cagcacgtgcatatgcatctgccgaagccgcacgatccgttcgtcgacctcgtgccggcc
gcgggggtgaaactcacgccgcgccattacgcgtatctgaagatttccgaagggtgtaat
catcgttgcacgttctgcatcatcccgtccatgcgcggtgacctggtgtcgcgtccggtc
gccgacgtcatgctcgaagcggaaaatctgttcaagtccggcgtgaaggaactgctggtg
atttcgcaggacaccagcgcgtacggcgtggacgtcaagtaccgcaccggattctggaac
ggcaagccgatcaagacgcgcatgaccgatctggtcggcgcgctcggcgaactcgccgcg
caatacggcgcatgggtgcgtctgcattacgtgtatccgtatccgagtgtggacgaagtg
attccgatgatggccgaaggtccgttcaagggccacgtgctgccgtatctggacgtgccg
ttccagcacgcgcatccggaagtgctgaagcgcatgaagcgcccggccaacgccgagaag
gtgatggagcgcgtgaagaagtggcgcgagatgtgcccggatctgaccattcgcagcacg
tttatcgccggcttcccaggcgagactgaagagcagttccagacgctgctcgatttcatt
cgcgaggcggaactggaccgggtcggctgcttcgcctattcgccggtcgaaggcgcgacg
gccaacgaactcgacggcgcgttgcccgacgaagtgcgtgaagagcgtcgcgcgcgtttc
atggaagttgccgaagaagtatcggcgaagcgtatcgcgaagaaggtcggcaagacgctg
aaggtgctggtcgacgagatcaacgccgacggcggcatcggccgcacggcggccgacgcg
cctgagatcgacggcgtggtgtatatcgcgccggctgtaaaggcgtccaaacgttacaag
gtcggcgatttcgtgtcggtgaagatcaccggcgccgacggtcacgacctgtggggcgag
gtatag
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