Paraburkholderia xenovorans LB400: DR64_520
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Entry
DR64_520 CDS
T03290
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bxb
Paraburkholderia xenovorans LB400
Pathway
bxb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DR64_520 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bxb03400
]
DR64_520 (recB)
Enzymes [BR:
bxb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DR64_520 (recB)
DNA repair and recombination proteins [BR:
bxb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DR64_520 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Herpes_TK
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AIP30123
UniProt:
Q140W4
LinkDB
All DBs
Position
1:complement(540276..543968)
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AA seq
1230 aa
AA seq
DB search
MSGGKRSYALVAEELDVFACSLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRSRLAELHRAIEMDDDGGDPFIGRLFETTLAPERGIGRESALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
VAHAHPAFAAWLVAKRAGPASLDEQLARRLKKPLAQLRWGTLDTSGNGADPQAGFDAACA
LWHAERDTIVSLLAEAQERLSKTSHKPDHVSAAIAAWTEYFAQGDCHAPPPKAALKLTAS
ALKKATKVKFEPPVHAFFEHAEALAAAVVAAEAAQRARWLSLVQTWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAVNQRSTAPIVEACNRLFEANPHAFV
LDGLDYQPVRAGERRRPPFSDPQASAGDFRIWTLPQGDAALNKREAQREASEACAAEIVR
LLRGAREGTVTIGDVPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATPDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSPADDPAHAADAMGW
VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALR
EPPSSGLPDAREYHDETGTAVLHYGCDDEEAEHASRYAVREQAAERARLVYVALTRAVYR
CYLVAGTYQSSRSTRESRRSVLNWLVGGSGHGFDDWLAEPPDEAALSARWQALAGGPITL
QPLPKPERRVPLESLQDRSAHMQARANRRPLRDQWRMASFSGLIAAGSKADEAHTPVEEV
RPDHDEIADVLVVTPAPAPHPQAHAEDDILAFPRGAAAGDCLHRMFELADFTEPPTWTDA
IRGALRERPAPAAPELAARLPAMMHNLLRDVVATELQPGMRLADLDPRRRLNELEFLFAA
PSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGDTAA
DYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYSYDTHIGGYLYLFVRGVRPHWH
DAEGPAGVHRRRPAFELVALLDAAMIGGVA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggggcaagcggagttacgcgctggtggccgaggaactcgacgtcttcgcctgt
tcgctcgacggcgtgaatcagatcgaggcttcggcgggcaccggcaagacctggaatatt
tgcgcgttgtacgtgcggctgctgctcgaaaagaacctgaatgcggatcagatcctggtc
gtcacgttcacgaaggcggcgaccgcggaattgcacgagcgcattcgcagccgtctcgcc
gaactgcaccgtgcgatcgaaatggacgacgacggcggcgatccgttcatcggccgtctc
tttgaaacgacgctggcgccggagcgcggcatcgggcgcgagtccgccttgaaggtggtg
cggcgtgcgctgcgcaccttcgatcaggcggcgatccacaccattcacgcattctgtcag
cgcgcgttgcaggaagcgccgtttgccgcggccatgccgttcgcttttgaaatggaagcc
gacgacgcggccttgcgcttcgaaatggcggctgatttctggcgcgagcaggtggagccg
gtggcgcatgcgcatcctgcatttgccgcgtggctggtggccaaacgcgccggtcccgct
tcactcgacgagcaactcgcgcggcgtctgaaaaagccgttggcgcagttgcgctggggc
acgctcgacacgagcggcaatggcgcggatccgcaagccggtttcgacgcggcctgcgcg
ctctggcatgcggagcgcgacacgatcgtcagtttgctggccgaggcgcaggagcgcttg
agcaagacttcgcacaagcccgatcatgtgagcgccgccatcgccgcatggaccgaatac
ttcgcgcagggcgactgccatgcgccgccgccgaaagcggcgttgaagctgacggcttcg
gccttgaagaaggccaccaaggtgaagttcgagccgcccgtgcatgcgttcttcgaacac
gctgaagcgctggcggcggccgtggtcgcggccgaagccgcgcaacgcgcgcgctggctc
tcgctcgtacagacctggctcgactacgcacccgccgaactggtggcacgcaagcgcacg
cgccgggtcgtgtcgttcgacgatctgctgtccaacctgtatcgcgcgctcgccgcgcac
ccctggcttgccgacgctctgcgcgcgcgttatccggctgcgctgatcgacgagtttcag
gacaccgatccgctgcagttcgcgatcttcagccgcatcttcgcgccggccggcccgctg
tttctggtcggcgatccgaagcaggcgatctacagttttcgcgcggcggatctgcatacc
tatctggcggcgcgcgaggcggcatcggcgtgctacacgctggctgtcaatcagcgctcg
accgcgcccatcgtcgaggcatgcaaccggctcttcgaagccaatcctcacgcattcgtg
ctggacggtctcgactatcagccggtgcgtgcgggcgaacggcgcaggccaccgttctcc
gacccgcaggcgagcgccggcgacttccgtatctggaccttgccgcagggcgacgccgca
ttgaacaagcgcgaggctcagcgcgaagcgagcgaggcgtgcgccgccgagatcgtgcgc
ctgctgcgcggcgcgcgcgagggcacggtgacgatcggcgacgtgccgctcgcgccgggc
aacatcgccgtgctggtgcaaacgcacaagcagggcagtctgatcaaacgcgtgctggcc
gcgtggggtgtcggcagcgtggaactggcgcaggcgtcggtgttcgccacgcccgacgcc
gagcagatcgaacgcgtcctcgccgcggtcgatacgccgggcgatctgcgccgtttgcgc
gccgcgctggcaacggactggctgggtctcgacgccgccgcgctgtggcgtctcgagcag
gtggccgacgcgccgtcgcccgccgacgaccccgcgcacgccgccgacgcgatgggctgg
gtcgaacgtttttcgcgttaccgcacgctgtggcatgagcgcggcttcgcggtaatgtgg
cgcacgctgatgcgtgagctgcgcgtcgcgcaacggctggttgccggaccggacggcgag
cgtcgtctgacaaacgtgaaccacctggccgaactcgtgcaggcgcgcgccgcgacgcaa
ccgggcattgcgccgaccttgcgctggctcgccgcgcaacgcacccagggcggtggcgaa
gaggcgcaattgcgcctcgaatcggatcgcaacctcgtgcagatcgtgacggtccacaaa
tcgaaagggctcgaatatgcggtggtgttctgtccgttcctgaacgacggcgcgttgcgc
gagccgccgtcgtccggcttgccggatgcgcgcgagtatcacgacgaaacaggcaccgcg
gtgctgcactacggttgcgacgacgaagaggccgagcatgcgtcgcgctacgcggtgcgc
gagcaggcggcggagcgggcgcggctcgtctacgtggcgttgacgcgcgcggtgtatcgc
tgctatctggtcgccggcacgtatcagtcgtcgcgctccaccagggaatcgcgccgcagc
gtgctgaactggctggtgggcggcagcggtcacggtttcgacgactggctcgccgagccg
cccgacgaagccgcgttgtcggcgcgctggcaggcgctggcgggcgggccgatcacgctg
cagccattgccgaagcccgagcgccgcgtgccgctggaaagcctgcaggaccgcagcgcg
catatgcaggcgcgggccaatcgcaggccgctgcgcgatcagtggcgcatggcgagtttc
agcggcctgatcgccgcgggcagtaaagctgatgaagcgcacacgccggtggaagaagtg
cgccccgatcacgacgaaattgccgatgtgctcgtggtcacgcccgcgcctgcaccgcac
cctcaagctcacgcggaagacgatattctcgcgttcccgcgcggcgcggcggcgggcgac
tgtctgcaccgcatgttcgaactcgccgatttcaccgagccccctacgtggaccgacgcc
attcgcggcgcgctgcgcgagcgtccggcgccggctgcgcctgagctcgccgcgcgcctg
cccgcgatgatgcacaacctgctccgggacgtggtcgccaccgaactgcagcctggcatg
agactcgcggatctggatccgcgccggcgcttgaacgagctggagtttctgttcgctgca
ccgtcgctggatttccccgcgttgcgagagctgctgatcgaacacggctaccccgacgtc
gcactggaacccggcgtgttgcgcgggttcgtcaaaggatttatcgacatgatcgtcgag
cacgacggacgtttctggatcgtcgactggaagtcgaaccatctgggcgacacggccgcc
gactacgccgccgcgccgctcgaagcggcgatggcgagtcacgcgtatcacctgcaggcg
ctgctttatacggtcgcattgcatcgttacctgaaaacgcgggtgcgcgattattcgtac
gacacgcatatcggcggctatctgtatctgttcgtgcgcggcgtgcgtccgcattggcac
gacgccgaaggaccggcgggcgtgcacaggcggcggccggcattcgagctggtcgcgctg
ctcgatgcggccatgatcggaggtgtcgcatga
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