Paraburkholderia xenovorans LB400: Bxe_A0538
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Entry
Bxe_A0538 CDS
T00340
Name
(GenBank) Putative ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bxe
Paraburkholderia xenovorans LB400
Brite
KEGG Orthology (KO) [BR:
bxe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bxe03016
]
Bxe_A0538
Enzymes [BR:
bxe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bxe_A0538
Transfer RNA biogenesis [BR:
bxe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Bxe_A0538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
MetJ
Motif
Other DBs
NCBI-ProteinID:
ABE32395
UniProt:
Q13U44
LinkDB
All DBs
Position
1:complement(4288237..4290366)
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AA seq
709 aa
AA seq
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MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRTKVRAKDVLIEFDKPSAAELMQQADAA
AQEIDLDFLWECAPDDEFPFATLGAEYFGERFGAIERAALVLRLHGSPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQAGYEEELKAGRLPGAFTGSKALALLTRPDKNTIEYK
ALEGAAAARGISQARLMLECGAIPSARALHEAKFLSEFFPHGTGFPPVTVGSVPEDLPEA
DVQAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIQRGDEVDAIARTRLSTVY
MPGDKITMLPDSVVEAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGTGDYPHKEDLAVLWPFAQALFEKRQAARASYGLRREVQRNTDFNFY
VEGEHVTITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLIACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYTAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGSEAEEADESEEEIIDAPDES
AEGEAEAQAEAELDGSEAAAAPNDAANGEGEGESASDAATHRHVAEPGR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggccggcagcgtgctgtcgcgccag
ggcgacgcttttcaggtcgagttgccgggcggccgccgcaccaaggtgcgcgcgaaagat
gtgctgatcgaattcgacaagccgagcgcggccgagctcatgcagcaggccgacgccgcc
gcgcaggagatcgatctcgacttcctgtgggaatgcgcgcctgacgacgaattcccgttc
gccacgctcggcgccgagtactttggcgaacgcttcggcgcgatcgagcgcgccgcgctg
gtgctgcgcctgcatgggtcgccggtgtatttccgccgcaagggccgcggcatgtatcag
cgcgcgccgcaggagcaactgaaaatggcgcttgccgggctggagcgcaagcgtcagcag
gcgctggtgcaggccggttatgaagaagagctgaaggccggccggctgccgggcgccttt
accggcagcaaggcgctggcgctgttgaccaggcccgacaagaacacgatcgaatacaag
gcgctcgaaggcgccgcggcggcgcgcggcatttcgcaagcgcgcctgatgctcgaatgc
ggcgccattccgtcggcgcgcgcgttgcacgaagcgaaatttctctccgagtttttcccg
cacggcaccggctttccgccggtcactgttggcagcgtaccggaagatctcccggaagcg
gacgtgcaggcgttctcgatcgacgacatcaccaccaccgaaatcgacgatgcgttctcc
gtcgagcatctggcggatggccgcgtgcggatcggcgtgcatatcgccgcgccggcgctc
ggcattcagcgcggcgacgaggtcgacgcgatcgcgcgcacgcgcctctccaccgtgtat
atgccgggcgacaagatcaccatgctgcccgacagcgtggttgaagcgttcacgctggcc
gaaggcggcttgcgcccggcgctttcgctgtatgtgatcgtcaatcgcgagacccaggaa
atcgtcgcgagcgaaacgcgcgccgagcgcgtgttcgtgaaaaacaatctgcgccacaac
acgctcgatgaactggtgaccgaagaggcgctggccgccggcaccggcgactatccgcac
aaggaagaccttgccgtgctgtggccgttcgcgcaggcgctgttcgaaaagcgccaggcc
gcgcgcgccagctatgggctgcgccgcgaagtgcagcgcaataccgacttcaacttctac
gtggaaggcgagcacgtcacgatcacgccgcgccggcgtggttcgccgctcgatacgatc
gtcgccgagctggcgattctcgcgaactcgtcgtggggcgcgttcctgcacgaccacggc
gtgccgggcatctatcgcacgcagcgcgcattcggcgcgccgaccggccccaagcgcacg
cgcatgcagaccaacgccgcgccgcacgaaggcctcggcgtcacccagtacgcttggagc
acgtcgccgctgcgccgttatgtcgacctggtgaaccagtggcaactgatcgcctgcgtg
cagcatggcgtgaccgcgaaactggccgcgccgttcaagccgaaagacgccgacctgttc
gccgtcgtgcaagggttcgacgatacgtacaccgcgtatgccgatcatcaacgccgcatg
gagtacttctggtgtctgcgctggctgaagcaggagaaccggaagcaggtggtggcgtcg
gtggtgaagggcgatctggtgcgcctcgaagagattcctctgctgctccacgtgccgggc
ctcggcgtgcacgcacgcggcacgcgtttgcagatggaagtgatgtcgatcgatgaattg
acggtcgaagcgtccgtgcgtctcctgcacgtactcgacgcgccgaccgtgacgagcggc
agcgaggccgaagaagcggacgagagcgaagaagaaatcatcgacgcgcccgacgagagc
gccgaaggcgaagccgaggctcaggccgaagccgaactcgacggcagcgaggcggcggcc
gcgccgaacgacgccgcaaatggcgaaggcgagggcgaaagcgcgagcgatgccgccacg
catcggcacgtcgcggagccgggacgatga
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