Paraburkholderia xenovorans LB400: Bxe_A0648
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Entry
Bxe_A0648 CDS
T00340
Name
(GenBank) Putative ATP-dependent RNA helicase 1
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bxe
Paraburkholderia xenovorans LB400
Pathway
bxe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bxe_A0648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxe03019
]
Bxe_A0648
Enzymes [BR:
bxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bxe_A0648
Messenger RNA biogenesis [BR:
bxe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bxe_A0648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
P-loop_SecA
CMS1
DegT_DnrJ_EryC1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABE32286
UniProt:
Q13UF3
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All DBs
Position
1:4165517..4167148
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AA seq
543 aa
AA seq
DB search
MPHSCLPGPICAVRKTALQRAFMSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNG
GDLLAGAQTGTGKTAGFTLPILQRLNSSPAVANGSGKRAVRALILTPTRELAAQVEESVR
AYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLD
EADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTT
AETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIH
GNKSQSARTRALAEFKDGTLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRT
GRAGATGEAVSLVCVDELQLLKDIEKLIKRPVPQEVVAGFEPDPTAKPEPILRRGQGGGG
GGGGRSPRQGQGAPKRDDARRDGAGSAKPAQRSGQRPANGQQQPKPQGAKPAGNGGQPRR
DGQRHDDRPRAVAHEGSAAQHAPRKPQAAKPQGGNPGALLGGTKPRNDAPRGGQPTRSGQ
RGR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgccgcattcatgcctgcctgggcccatttgtgccgttcgcaaaactgcattgcaaaga
gcttttatgtcttttgattctctcggcttgtccgaaccgttggtccgcgctgtacacgaa
cttggctacaccacgccgactccgatccagacgcaagcgattcccgctgtgctcaacggc
ggcgacctgctggccggtgcgcaaaccggcaccggcaagaccgccggcttcacgctgccg
atcctgcaacgtctgaactcctcgcccgccgttgcgaacggttcgggcaagcgcgccgtg
cgcgcgctgatcctcacgcccacgcgtgaactggccgcgcaggtggaagaaagcgtgcgc
gcctacggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaat
ccgcagatcggcgcgttgcgcagcggcgtggatatcgtcgtcgccacgccgggccgtttg
ctcgatcacatgcagcagaaaaccatcgacctgtcgcatctcgagattctcgtgctcgac
gaggccgaccgtatgctcgacatgggcttcatccacgacatcaaacgcgtgctcgccaag
ctgccgccgaagcggcagaacctgctgttctcggccactttctccgacgagatcaagacg
ctcgccgacaatctgctcgactcgccggcgctgatcgaagtcgcacgccgcaacacgacg
gcggaaacggtcgcgcagaagattcacccggtggaccgtgacaagaagcgcgagttgctc
acgcatctgatcaaacagcacaactggttccaggtgctggtgttcacgcgcaccaagcac
ggcgccaaccgccttgccgaacagttgaccaaagacggcatcagcgccctggcgattcac
ggcaacaagagccagtcggcccgtacccgcgcgctcgccgagttcaaggacggcacgctg
caggtgctggtcgcgaccgacatcgccgcgcgcggcatcgacatcgatcaactgccgcac
gtggtcaactacgatttgccgaacgtgccggaagactacgtgcaccgcatcggccgcacg
ggccgcgcaggcgctaccggcgaagcggtctcgctggtgtgcgtcgacgaactgcaactg
ctgaaggacatcgagaagctgatcaagcgtccggtgccgcaggaagtggttgccggtttc
gaaccggacccgaccgcgaagccggagccgatcctgcgccgcggccagggtggtggcggc
ggcggtggtggccgctcgccgcgtcagggtcaaggcgcaccgaagcgtgacgatgcaagg
cgcgatggcgccggttccgcgaaaccggcgcaacgttcgggtcaacgtccggccaacggt
caacagcagccgaagccgcagggtgcgaagccggccggcaacggcggtcagccgcgtcgt
gacggccagcgccacgacgaccggccgcgcgccgtcgcgcatgaaggcagcgccgcgcag
catgcgccgcgcaagccgcaggccgcgaagccgcaaggcggcaatccgggtgcgttgctg
ggtggcacgaagccgcgcaacgacgcgccgcgcggtggccagcccacgcgcagtggtcag
cgcgggcgctga
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