Paraburkholderia xenovorans LB400: Bxe_A1513
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Entry
Bxe_A1513 CDS
T00340
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bxe
Paraburkholderia xenovorans LB400
Brite
KEGG Orthology (KO) [BR:
bxe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxe03019
]
Bxe_A1513
Enzymes [BR:
bxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bxe_A1513
Messenger RNA biogenesis [BR:
bxe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Bxe_A1513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABE31441
UniProt:
Q13WU8
LinkDB
All DBs
Position
1:complement(3244664..3248950)
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AA seq
1428 aa
AA seq
DB search
MSNVPKSPAAANENPAPAADQAKAGEAKRRNAQDAERNAPQTAREPRRAAENAPASAQRN
NPRRESGGAPAKKSPGAGDAERGANRREPQPPQSPQSPRPPRAPRAPRLVEPNPIPPITY
PEALPVSGRREEIARAIVQNQVVIVCGETGSGKTTQLPKICLELGRGLGAGGSGLIGHTQ
PRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKLMTDGILLAETQTDPLLK
AYDTLIIDEAHERSLNIDFLLGYLKEILVKRPDLKLIVTSATIDADRFARHFGSEDKPAP
VIEVSGRLYPVEVRYRPVAEDSPAVKAAQGDGPAAQRGGDRPKTQRETDRDLMEAIVDAV
DELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFRTSNAR
RIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQVESISQAAANQRAGRCGR
VADGICIRLYEESDYQGRVRFTDPEILRSSLASVILRMKSLHLTAIETFPFIEPPPGRAI
ADGYQLLNELGAVDDDNQLTPLGRELARLPLDPRVGRMILAARDQQALKEVLIIASALSV
QDPRDRPIEAQEQADQAHRRFADERSEFLQWLKIWNWFEEAITHKKSNRQLHEECRKNFL
SQLRLREWRDVHSQLLTVVREHGWRLNEAEATFEQIHLALLTGLLGNIGLKADDEPYYLG
ARGIKFYLWPGSALVKKAGKWVMAAELVETSRLYARCIAKIEPEWIEKIGPHLLKKSLSE
PHWEKRAAQVSAFERAVLYGLPIYHRRRVSFGKQDPARARELFIRGALVEGEFDTKLAFF
AHNRKLLADIEQLEHKSRRQDVLVDDELIFAYYDQALPKGIYTGASFERWYRDEVKKSGQ
PEDRLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMAGVDMALTYHFEPGSPRDGVTLGVPL
YALNQVDARRCEWLVPGMLKEKTQLLLKSLPQKLRRHCVPVPEYAAGFVDRHGGARFGAG
GLLESLIADIREQTQVAMKQSDFKLETLPPHLFMNFKIVDEHGRQLAMGRNLSQLRAELG
GQAQQHFQKIASSAAGAALADAGGGGVATPSQASGQAGAAAQRGKGGAALPGPQSAPQAG
AQGTALYEKLTTWNFGKLPELLEIRRGGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHR
AGLRRLFALQLKEPIKYLEKNLPGLREMAMQFMPRGTQEELRDQLIDTALDRACLQDPLP
DDDAGFHTRRDEGRSRLTLLAQEIARLVGQILGEYASVTKKLVQAKSFTAAHADLQNQLD
GLIGKRFVVDTPYPQLAHFPRYLKGIALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQ
RGGVLDPRLSEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgctgcggcgaacgagaatccggcgccggccgccgat
caggcaaaggccggcgaagcgaagcgccgcaatgcgcaggacgccgaacgcaacgcgccg
caaacggcgcgcgagccgcggcgcgccgcggaaaatgcgccggcctcggcgcagagaaat
aatccgcgccgcgagtccggcggcgcgccggcgaaaaaatcgccgggagcaggcgacgcc
gagcgcggcgcgaaccgccgcgaaccgcagccgccgcagtcgccgcagtcgccgcgtccg
ccacgcgcgccgcgcgccccgcgtctcgtcgagcccaatccgattccgccgattacctat
ccggaagcgttgcccgtttcgggccgccgcgaggaaatcgcgagagccatcgtacagaat
caggtggtgatcgtctgcggcgagaccggctccggtaaaaccacccagttgccgaaaatc
tgcctcgaactgggccgcgggctcggcgcgggcggctccggtctgatcggccacacgcag
ccgcgccggatcgccgcgtcggcgacgggccgccgcattgccgaagagctcggcacgccg
tttggcgaagtggtcggctacaaggtgcgctttaccgacaatctgtcgccgggtgcatcg
gtcaagctgatgaccgacggtatcctgctcgccgaaacgcaaaccgatccgctgctgaaa
gcgtatgacacgctgatcatcgacgaggcgcacgagcgcagtctgaacatcgactttctg
ctcggctatctgaaggaaattctcgtcaagcgtcccgatctgaagttgatcgtgacctcc
gcgacaatcgacgcggaccgtttcgcgcgtcacttcggcagcgaagacaagcccgcgccg
gtgatcgaggtgagcggccggctttatccggtcgaggtgcgctaccggcccgtcgcggaa
gacagccccgccgtgaaagcggcgcaaggtgatgggcctgctgcgcaacgcggcggcgac
cggccgaaaacccagcgcgaaaccgatcgcgatctgatggaagccatcgtcgacgccgtc
gacgaactgtgccgtgaaggtccgggcgacgtgctcgtgttcctgcccggcgagcgcgaa
atccgcgacgccgccgaggcgctgcgcaagcaccatccgccgcacacggaaattctgccg
ctgttcgcccgtctttccgcggccgaacaggagcgcgtgttccgcacctcgaacgcgcgg
cgcatcgtgctcgcgactaacgtcgccgaaacctcgctgacggtgccgggcattcgctac
gtggtcgataccggacttgcgcgcgtgaagcgctactcgtatcgcaacaaggtcgagcag
ttgcaggtcgagtcgatttcgcaggccgcagccaaccagcgggccggccgttgcggccgg
gtcgccgacggcatctgcattcgcctctacgaggagagcgattaccagggccgcgtgcgt
tttaccgatccggagattctgcgttcgtcgctggcctcggtgattctgcgcatgaagtcg
ctgcatctgacggcgatcgaaacgttcccgttcatcgagccgccgccgggccgcgcgatc
gccgacggctatcagttgctcaacgaactcggcgccgtcgacgacgacaaccagctcacg
ccgctcggccgcgaactcgcgcgcctgccgctcgatccgcgcgtcggccggatgattctg
gccgcgcgcgaccagcaggcgctgaaggaagtgttgatcatcgcgagcgcgttgtccgtg
caggatccgcgcgaccggccgatcgaggcgcaggagcaggccgatcaggcgcatcgccgg
ttcgccgacgagcgctcggaattcctgcaatggctgaaaatctggaactggttcgaagaa
gcgatcacgcacaagaaatcgaacaggcagttgcacgaggaatgccgcaagaacttcctg
tcgcaactgcgtctgcgcgaatggcgcgatgtgcattcgcaactgctgacggtggtgcgt
gaacatggctggcgtttgaacgaagcggaagcgactttcgagcagatccatctcgcgctg
ctgacgggtttgctcggcaatatcggcctgaaggccgacgacgaaccgtattacctcggc
gcgcgcggcatcaaattttatctgtggccgggctcggcgctggtgaagaaagccggcaag
tgggtgatggccgccgaactggtcgagacgagccggctgtacgcgcgctgcatcgcgaag
atcgagccggaatggatcgagaagatcggcccgcatctgttgaagaagtcgctttccgag
ccgcattgggagaagcgcgcggcgcaggtgtcggcattcgagcgcgcggtgctgtacggt
ctgccgatctatcaccggcggcgcgtgagcttcggcaagcaggatccggcgcgcgcccgc
gagctgttcattcgcggtgcgctggtggaaggcgagttcgataccaagctcgcgttcttc
gcgcacaaccgcaagctgcttgccgatatcgaacaactcgaacacaagtcgcgccgccag
gacgtgctagtcgacgacgagctgatttttgcgtactacgatcaggcgctgccgaagggc
atttataccggcgcgtcgttcgagcgctggtatcgcgacgaggtgaaaaagagcggccag
ccggaagacaggctgcgcctgctgtatctgtcgcgcgacgatctgatgcggcacgaagcc
gccggcgtgacgaccgacctgttcccgaaacgcatgacgatggcgggcgtcgacatggcg
ctcacgtatcacttcgagccgggctcgccgcgcgacggcgtgacgctcggcgtgccgctg
tatgcgctgaatcaggtcgacgcgcggcgctgcgaatggctcgtgcccggcatgctgaag
gagaagacgcaactgctgctgaagtccttgccgcaaaagctgcgccgtcactgcgtgccg
gtgccggagtatgcggcgggtttcgtcgaccggcatggcggtgcgcgcttcggcgcgggc
ggtttgctcgagtcgctgatcgccgatattcgcgagcagacccaggtcgcgatgaagcag
tcggacttcaagctcgaaacgctgccgccgcatctgttcatgaacttcaagatcgtcgac
gagcatgggcgtcagctcgcgatgggccgcaatctctcacaactgcgcgccgaactcggc
ggccaggcgcagcagcattttcagaagatcgcgtcgagcgcggcgggcgcggcgttggcg
gacgcgggcggcggtggtgtcgcaacgccgtcgcaggcgtccggccaggcaggcgcagcg
gcgcagcgaggcaagggcggtgctgcgctgccgggtccgcagagcgcgccgcaagccggc
gcgcagggcaccgcattgtatgaaaagctgacgacgtggaacttcggcaagctccccgag
ctgcttgaaatccgtcgtggcggccagacgctgttcggttatccggcgctcgtggatcgc
ggcacgcattgcgacgtggaggtgttcgattcgcccgacgaagccgcgcggattcatcgc
gcgggattgcgccggctgttcgcgttgcagttgaaggagccgatcaagtatctggaaaag
aatctgccgggcttgcgcgaaatggcaatgcagttcatgccgcgcggcacccaggaagag
ttgcgcgatcaactgatcgataccgcgctcgaccgcgcctgtctgcaagacccgctaccc
gacgacgacgccggtttccacacgcgccgcgacgagggccgcagccgcctgacgttgctg
gcccaggaaatcgcccggctggtcgggcagattctcggcgaatacgcgagcgtgacgaaa
aagctggtgcaggcgaagtcgttcacggcggcgcatgcggacctgcagaatcagctcgac
gggctgatcggcaagcgcttcgtggtcgacacgccgtacccgcaactggcgcatttcccg
cgctatctgaaagggatcgcgctgcgcatcgacaagctgaaggccgaccctgcacgcgac
gcccggcaattcgccgagttccagccgctgctccagaactatcagcgcgcggtggcgcag
cgcggcggcgtgctggatccgcgcctgtcggaattccgctggctgctggaggaactgcgg
atctcgctgttcgcgcaggaattgcgcacgccgatgccggtttcggtgaagcgcctctac
aaggtgtgggagtcgatgcagcgctga
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