Paraburkholderia xenovorans LB400: Bxe_A2189
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Entry
Bxe_A2189 CDS
T00340
Name
(GenBank) Putative ATP-dependent RNA helicase, rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bxe
Paraburkholderia xenovorans LB400
Pathway
bxe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bxe_A2189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxe03019
]
Bxe_A2189
Enzymes [BR:
bxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bxe_A2189
Messenger RNA biogenesis [BR:
bxe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bxe_A2189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABE30780
UniProt:
Q13YQ9
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All DBs
Position
1:complement(2500117..2501688)
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AA seq
523 aa
AA seq
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MRIQAAWYFSIRLKRRFGAANGFCNSRDKAPARIAALAWNTPMSFALLGLIDPLLRNVQD
LNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVL
VLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDL
NRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRRQTLLFSATFTDDIRAMAA
GILRDPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWRHALVFVKTRNGVD
YLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLPLVIN
VDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLRREEEPGFEAE
HRVPQTSATGEIIRKPKKPKKSKVPQAAPREMQVLSKKPHPQRGENKPKLAAQRAVAVGK
DTSPVSGSPFSVQKPRSKAAGKPVAGSRKPAGKPAGGRGKRQS
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaggattcaggcggcatggtatttttcgatccgtctgaagcgccggtttggcgccgcc
aatgggttctgcaactcgcgtgacaaagcacccgctagaattgcggctttagcctggaat
acgccaatgtcctttgccttgcttggcctgatcgatcctttgctgcgtaatgtgcaggac
ctcaattaccagacacctacgccggtgcaggtcaaggcgattcctgccgtgctgggcggc
agggacgtcatggctgcggcacagaccggcactggcaaaacggcgggttttgcgctgccg
ctattgcaacggctggtgcaacacggcccggcagtgtccagcaaccgcgcgcgtgttctg
gtactggtgcccacgcgtgaactggccgaacaggtgctgcaaagctttatcgattacggc
aaaggcctcgacttacgatttctggccgcctatggcggcgtgagcatcaacccgcagatg
atgaagctgcgcaaaggggtggatgtgctcgtcgctacgccgggccgtttgctggatctc
aatcgccagaacgccgtgcagttagatcaggtgcaaacgctggtgctggatgaagccgac
cgcatgctggatctgggctttgcgcgcgagctcaacgccgtttttgccgcgttgcccgtt
cggcgccagaccttgctgttctccgccacgttcaccgacgatatccgcgcgatggcggcg
ggcattctgcgcgacccggtcaatatcagcgtcagcccgcccaatgccacggccagcaag
atcaggcagtgggtggtgacggtggacaaaaagaacaagcccgaccttttcatgcacctc
gtggctgggaacaactggcggcacgcgctggtgttcgtcaaaacccgcaatggcgtggat
tacctggcggccatgctggatgcagcgggctatgcggtcgacaccatccacggcgacaaa
ccgcaacccgcgcgcctgcgtgcgctcgaacgtttcaagacgggcgaagtgcagatgctg
gtagccaccgatgtggctgcgcgcggtctggatatcgacgatctgccgctggtgatcaac
gtcgatctgccgatcgtggcgcaggactatgtgcaccggattggccgtaccggccgcgcg
ggcgccagcggcgtggcggtgtcgctcgtgtgtgccgatgaagcgccgcaactggccgcg
attgaagcactgatccggcaaacgctgcgccgtgaagaagaaccgggttttgaagcggaa
caccgcgtgccgcaaaccagcgcgacgggcgagatcatcaggaagccgaaaaaacccaag
aaatctaaagtgccgcaagctgcgccgcgcgagatgcaggtactcagcaaaaagccgcac
ccgcaacgtggagaaaacaaacccaagcttgcggcgcaacgcgctgtggctgtgggtaag
gacacgagcccggtgagcggtagcccattcagtgtgcagaagccgcgtagcaaggccgcc
ggcaagccggttgcgggttcacgtaagccggctggcaaacccgctggtgggcgcggtaaa
cgtcaatcgtga
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