Bacillus amyloliquefaciens XH7: BAXH7_00460
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Entry
BAXH7_00460 CDS
T01836
Symbol
ydbR
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bxh
Bacillus amyloliquefaciens XH7
Pathway
bxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAXH7_00460 (ydbR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxh03019
]
BAXH7_00460 (ydbR)
03009 Ribosome biogenesis [BR:
bxh03009
]
BAXH7_00460 (ydbR)
Enzymes [BR:
bxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BAXH7_00460 (ydbR)
Messenger RNA biogenesis [BR:
bxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAXH7_00460 (ydbR)
Ribosome biogenesis [BR:
bxh03009
]
Prokaryotic type
rRNA helicases
BAXH7_00460 (ydbR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEK87606
LinkDB
All DBs
Position
456604..458088
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AA seq
494 aa
AA seq
DB search
MTITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIP
LVEKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMATKEPDSTPVRLTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKSSNRSSYDKKRSN
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagatttccaattaagttctgatctcatgaaatcaatcaatcgt
atgggatttgaagaagcaacaccgattcaggcacaaacgattccgctcggacttttaaat
aaagatgtcatcggacaagcgcaaacaggtacaggtaaaacagctgcgttcggtataccc
cttgttgaaaaaatgaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagagttatataaaatcggacaagataagcgtgcg
aaagtgctgcctatttacggcggtcaggatatcggacgtcaaatccgcgcattgaagaaa
aacccgcatatcatcgtaggtacgccgggacgtcttcttgaccatatcaaccgccgcacg
atccgtttaaacaacgtgaacacggttgtcatggatgaggcagatgaaatgctgaacatg
ggattcattgatgatatcgaatctattctctcaaacgtgccgagcgagcaccaaacgctc
ttattctcagcaacaatgcctgcgccgatcaaacggatcgcagagcgtttcatgactgag
ccggagcacgtaaaagtaaaagcgaaagaaatgactgtatcaaacatccagcagttctac
ttggaagtgcaagaacgcaaaaaattcgacacgctgactcgtcttcttgacattcagtct
ccggaacttgcgatcgtattcggccgtacaaaacgccgtgttgacgaattagcggaagct
ctgaaccttcgcggatatgcggctgaaggaattcacggcgacttaacgcaggcgaagcgt
atggtagcgctccgcaagtttaaagaaggtgcgatcgaagtgcttgtagcgactgacgtt
gctgcccgcggacttgatatctcaggcgttacccacgtgtacaactttgacgtgcctcaa
gatcctgaaagctacgttcaccgtatcggaagaacgggccgcgcaggaaaaacgggtatg
gcgatgacgtttatcacaccgcgtgagaaaagcatgcttcgcgcgattgaacagacgaca
aaacgcaaaatggaccgcatgaaagagccgacgcttgacgaagcattagaaggacagcag
caggtgacggttgaccgtctgcgcacgacgatcagcgaaaacaacctgaacttctacatg
acggcagctgcggaactgttagaagatcatgatgcagtgacagttgtggctgcagccatt
aaaatggcgactaaagagccggacagcacgcctgtacgcctcactgatgaagcgccgatg
gtcagcaaacgctataaaaaccagcgtacttctaagcgcagagacggccaaggcggcggc
taccgcggcggtaaagggaaaagcagcaaccgttcttcctacgataaaaaacgttcaaac
gaccgccgttcttcaggtgacagacgccagaaaaaatcatactaa
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