Bacillus amyloliquefaciens XH7: BAXH7_01539
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Entry
BAXH7_01539 CDS
T01836
Symbol
yocI
Name
(GenBank) putative ATP-dependent nucleic acid helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bxh
Bacillus amyloliquefaciens XH7
Pathway
bxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAXH7_01539 (yocI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxh03019
]
BAXH7_01539 (yocI)
03400 DNA repair and recombination proteins [BR:
bxh03400
]
BAXH7_01539 (yocI)
Enzymes [BR:
bxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAXH7_01539 (yocI)
Messenger RNA biogenesis [BR:
bxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAXH7_01539 (yocI)
DNA repair and recombination proteins [BR:
bxh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BAXH7_01539 (yocI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEK88677
LinkDB
All DBs
Position
1412544..1414322
Genome browser
AA seq
592 aa
AA seq
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MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLT
SPEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIHKEHTVYTGFARENLTFKVAKGENKDRFIEQYLDRNKHEAGIIYAATR
KETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGESEAEACGACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLNGSKNKKVLENGFSSLSTYGIMKHQTTGEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALEAAAVTENDELFEILRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDHDLLSVKGVGEQKRLKYGALFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggataaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagaggagagaaaaaacacggtctgcattatg
ccgacggggggcggaaaatcaatctgctatcagattcccgcacttctgtttgaaggtacc
actatcgttatttcccctcttatttccttaatgaaagatcaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcactcagacaagccgggacattcatgagcga
ctgaccggtttgaaagaaggggcttaccggctcttttacataacaccggagcgtttgact
tctcctgaattcattcacatcctgcagaatattacggttcctcttgtcgccatagacgaa
gctcactgtatatcgcaatgggggcatgatttcaggccgagttaccggaatattgaaatc
ctttttaatgaattaaaagaacctcccgtcattatcgcgttaacggcgacggctacgcct
gaggttcatgatgatatctgcaagcagcttcatattcataaagaacatactgtctatacc
ggttttgccagagagaatttaacgttcaaagtagcaaagggcgaaaacaaagaccgtttt
atcgagcagtacctggacagaaataaacacgaagccggcattatatatgcagcgaccaga
aaagaaaccgaccgtatatatgagaaattaaaacgcagcggcattaatgccggccgttat
cacggcggattggcagatgatgacagaaaagagcagcaggagcggtttcttaacgatcag
atacaagtaatggttgccacgtcagctttcggaatgggaatcgacaagagcaacatcaga
ttcgttctccacgcacagattccaaaagatatggagagctattatcaggaagccggacgg
gccgggcgcgacggtctcgatagcgagtgcgtgctcttgttttctccgcaggatattatg
gtgcagcgctttttaatagaccaatcggcagccggagaagaaaaacaaaagcaggatctc
aaaaaactgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagagtgaggcagaagcttgcggagcatgcggcaattgcactgat
acaaggacagcccatgacgtcacaaaagaagcgcagatggtattgtcatgtattatcaga
atgaatgagcgtttcggaaaaacgatggtcgcacaggtgcttaacgggtcaaaaaataaa
aaagtgctggaaaacggcttcagcagcctgtccacatacggcattatgaagcatcaaaca
acaggggaaatcagtgattttatcgaattcctgatttcagatgaatatatcagaatggcg
gacggtacatttccgacgcttatggtcacacaaaaaggcagggatgttctgcttggaaag
agcgcagtcgcgagaaaagaagccttagaggccgccgccgttaccgaaaacgatgaatta
tttgagattctccggcgtctccgcaaagagatcgcagcggaacaaggcgtgcctccattt
gtcgtgttctcagatcagacgttaaaagaaatgtcggcgaaacttccgaaaacagatcat
gatcttctttccgtaaaaggggtaggggaacaaaaaagattgaaatacggagcgcttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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