Bradyrhizobium xenonodulans: I3J27_00560
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Entry
I3J27_00560 CDS
T09324
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn02020
Two-component system
bxn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I3J27_00560 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I3J27_00560 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bxn03021
]
I3J27_00560 (rpoN)
Transcription machinery [BR:
bxn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I3J27_00560 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WBL78956
LinkDB
All DBs
Position
complement(125064..126686)
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AA seq
540 aa
AA seq
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MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLTTFVEEELERNPLLERANDEAPGGE
APAEAGQFSDGDDFGGGHSDEPGGGPGEAFEPGQEEWMSKDLGTRAEIEQTLDTGLDNVF
SEEPAEAAARNAQDAAPTTYTEWGGGASGDEDYNLEAFVAAETTLRDHLAEQLSVAFTGP
AQRMIGQYLIDLVDEAGYLPPDLGQAAERLGASQADVENVLAVLQKFDPPGVCARNLSEC
LAIQLRELDRYDPAMQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIGEIRRLNPKPGM
KFGSARLQTMVPDVYVRPGPDGGWHVELNSDTLPRVLVNQTYYSELSKKIGKDGDKSYFT
DALQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADAIQMHEST
VSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHHIKQLIDSEAPAAILSD
DTIVERLRASGIDIARRTVAKYREAMRIPSSVQRRRDKQSALGNVLSAAMSDRSRNTEPA
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaacgcagagattagagttccggcaatcgcagtcgctggtcatgacgccgcag
ctgatgcaggcgatcaagctgctgcaattgtccaatctcgatctcaccaccttcgtggaa
gaggaactcgagcggaaccccctgctggagcgggccaatgacgaagcccccggtggcgaa
gccccggccgaggccggccagttcagcgatggcgacgatttcggtggcggccacagcgac
gagccgggcggcggtccgggcgaggccttcgagccgggccaggaagaatggatgagcaag
gatctcggcactcgtgccgagatcgagcagaccctggacacgggcctcgacaacgtcttc
tccgaggagcccgccgaagccgccgcgcgcaacgcccaggacgccgcgccgaccacctac
accgaatggggcggcggcgcctccggcgacgaggactacaatctcgaggccttcgtcgcc
gcggaaaccacgcttcgtgaccacctcgccgagcagctctcggtggccttcacgggtcct
gcgcagcggatgatcggccagtatttgatcgacctcgtcgacgaggccggctatctgccg
ccggacctcggccaggctgccgagcgcctgggcgcatcgcaagccgacgtcgagaacgtc
cttgccgtgctgcaaaaattcgatccgcccggcgtctgtgcacgcaatttgagcgaatgc
ctggcgatccagctccgcgagctcgaccgctacgaccccgcgatgcaggcgctcgtcgag
catctcgatcttctggcgaagcgcgacattgcgagcctgcgcaagctctgcggcgtcgac
gacgaggacatcgccgacatgatcggcgagatccgccgcctcaatcccaagcccggcatg
aagttcggctcggcgcggctccagaccatggtgcccgacgtctacgttcgcccgggcccc
gacggcggctggcatgtcgagctcaacagcgacaccttgccgcgcgtgctggtcaaccag
acctactactccgagctgtcgaagaagatcggcaaggacggcgacaaatcctatttcacc
gacgcgctccagaacgcgacctggctggtgcgcgcgctcgaccagcgcgcccgcaccatc
ctgaaagttgcgacggaaatcgtccgccagcaggacggcttcttcacccacggcgtggcg
catttgcggccgctgaatctgaaggccgtcgccgacgccatccagatgcatgaatccacg
gtgtcgcgcgtcaccgccaacaaatacatggcgacaaatcgcggcacattcgagttgaaa
tatttcttcacggcctcgatcgcctcggccgacggcggcgaggcgcattcggcggaagcc
gtgcgccaccacatcaagcagctgatcgattcggaggcgccagccgcgatcctgtcggac
gacaccatcgtggaacgcttgcgcgcttcgggcattgatattgcccgccgcacggttgcg
aagtaccgcgaagccatgcgcattccgtcctcggtgcaacgccgccgcgacaagcagagc
gcccttggtaacgtcctttccgccgcaatgtccgatcgctcccgcaacaccgagccggcc
tga
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