Bradyrhizobium xenonodulans: I3J27_00580
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Entry
I3J27_00580 CDS
T09324
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bxn
Bradyrhizobium xenonodulans
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bxn03016
]
I3J27_00580
Enzymes [BR:
bxn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
I3J27_00580
Transfer RNA biogenesis [BR:
bxn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I3J27_00580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WBL78960
LinkDB
All DBs
Position
complement(129702..130316)
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AA seq
204 aa
AA seq
DB search
MTVRLHRGDLPDLTRYTTAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTDA
PNLKALLANPAITKIFHFARFDVAVLYQTFGVMTGPIYCTKIASRLTRTYTDRHGLKDLV
REVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTALAKAC
FDFLPTRCLLDLQGWAEEDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtacgcctgcaccgcggcgacctgcccgacctcacgcgctacaccacagcggtg
gcgatcgacaccgagaccatggggctgaacccgcaccgtgaccgcctctgcgtggtgcag
ctttcgcccggcgacggcagcgccgacgtggtgcagatccccaagggccacaccgatgcg
ccgaacctgaaggccctgctggccaatccagccatcacaaaaatcttccacttcgcgcgg
ttcgacgtcgcggtgctgtaccagaccttcggcgtcatgaccgggccgatctattgcacc
aagattgcctcccgcctgacccgcacctacaccgaccgccatggcctcaaggatctcgtg
cgcgaggtgctcaatgtcgatctctccaagcagcagcagtccagcgactggggttccgac
agcctgaccgagccgcagctcgcctacgccgcctccgacgtgctgcatctgcacgccttg
cgcgagcggctcgatgccatgctggtccgggaaggccgcactgcgctggcaaaagcctgt
ttcgacttcctgccgacccgctgcctgctcgacctccagggctgggccgaagaggacatt
ttcgcacattcctga
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