Bradyrhizobium xenonodulans: I3J27_16805
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Entry
I3J27_16805 CDS
T09324
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bxn
Bradyrhizobium xenonodulans
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bxn03016
]
I3J27_16805 (rnd)
Enzymes [BR:
bxn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
I3J27_16805 (rnd)
Transfer RNA biogenesis [BR:
bxn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I3J27_16805 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WBL81996
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All DBs
Position
complement(3617038..3618186)
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AA seq
382 aa
AA seq
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MDLITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAAGI
DLKPFFELMGNESVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYGDSIAYDAL
VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI
EMEVLTSPRTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRDVPRGRVLRDE
AVSDIATHAPNTLEKLANLRSVPKGFEKSKWGADIVAAVERGLARDFSTLPKLEKPRNNN
NGAATVELLKVLLRMTAERHAVASKVIATVDDLEEIAADDEADVPALRGWRRELFGDAAL
KLKRGELALAIEKGRVIGVQRA
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggatttgattaccaccaccgctgacctcgcggctgcctgcagccggctggccaagcac
cccgtcattaccgtcgataccgagttcctgcgcgaaaccacctattacccgctgctgtgc
gtggtgcagatggccagccccgaggaagcgatcgtcatcgacaccctggccgcaggcatt
gacctcaagccgttcttcgagctgatgggcaacgagagcgtgctgaaggtctttcacgcc
gcccgccaggacatcgaaatcatctggcaccaggccaatatcatcccgcacccggtgttc
gacacccaggtcgcggccatggtgctcggctatggcgacagcatcgcctatgacgcgctg
gtcgagaaggtcaccggccaccgcccggacaagacccaccgcttcaccgactggtcgcgg
cggccgctgaccaaggagcagatgcattacgcagtgtccgacgtcacgcatttgcgcgac
gtgttcgccgcgctcgatgccgatctcaagaagcggcgccgcagcgaatgggtctcgatc
gagatggaggttctgacctcgccccgcacctacgacttccaccccgagcgggcctgggaa
cggctcaagacgcgggtgcgcaagccgaaggacctcgccgtcctgatggaggtcgccgcc
tggcgcgagcaggaagcgcagagccgcgacgtgccgcgcggccgcgtgctgcgcgacgag
gccgtcagcgacatcgccacccacgcgccgaacacgctggagaagctcgcaaacctgcgc
tccgtgccgaaggggtttgagaaatccaaatggggcgcggatatcgtcgccgcggtcgag
cgcggcctggcgcgggatttctcgacgctgccgaagctggagaagccgcgcaacaacaac
aatggcgccgcgaccgtcgagctgttgaaggtgctgctgcgcatgacggcggaacgtcat
gcggtcgccagcaaggtgatcgccaccgtcgacgatctcgaggagatcgcagccgacgac
gaggccgacgtccccgctttgcgcggctggcgacgcgagctgttcggcgatgccgccttg
aagctcaagcgcggtgagctggcgctcgcgatcgagaaaggccgcgtgatcggggttcag
cgggcgtaa
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