Bradyrhizobium xenonodulans: I3J27_17660
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Entry
I3J27_17660 CDS
T09324
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3J27_17660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxn03019
]
I3J27_17660
03009 Ribosome biogenesis [BR:
bxn03009
]
I3J27_17660
Enzymes [BR:
bxn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I3J27_17660
Messenger RNA biogenesis [BR:
bxn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I3J27_17660
Ribosome biogenesis [BR:
bxn03009
]
Prokaryotic type
rRNA processing factors
I3J27_17660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
WBL82162
LinkDB
All DBs
Position
complement(3780460..3783546)
Genome browser
AA seq
1028 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNAR
RRGHGDRVRSDIVEGLDAGADPSAQPVEGETLPAHAEGASQDGEHLHAEAEHHGEHDHHD
HDHGDHDHDDHHHAHDHDDHGHEGEHEHHGHADEAPAPVATIGAEPVVATETVAEPPEAA
ASEPQASEAYAEALAETVTSAAEPADAVYAAGESAEASHAESASDTAEDDDDEDEDEDGE
EAEEEVVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTT
YLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTK
PEIKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGESGY
REARDFMKMLMPANVGAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEA
LVSIDVNSGRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRA
VERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSS
VALQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLSVIADPSV
SGPQAYLIDRGEQVHTLEAAKALLAAQAAASPPPVAEEAYDDDEFDPELESEVETEETEG
LTEEQASGDASPEQDGQRRKRRRRRRGRGGQRDGEVREDGAPVSSEAAVAAGEGEEDAES
EQDGEEGEDQAARGEQQGSADRRRRRGRRGGRRRRGGGEDGLAGSISDELAAGAPPEATD
AVADFDGAGGEPAPSIGQAEHIAEPQFTQPEPRAEVRTEAPAQPEPTPAAVAAEEEPADD
RAARRRSTVREKVSFLSSSPSEPATPVEQAAEPIAPPPAPEPAPEPASETPAAPRRAGWW
SRRFGGGE
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaggagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaactgcgcggg
aatatctacctcgccaaggtcacccgggtggagccctcgctccaggccgccttcgtcgaa
tatggcggcaaccgccacggcttcctggccttcagcgaaatccatcccgactactaccag
atcccggtcgccgaccggcaggcgctgatcgaggccgaggaacaggcccaccgcgaggcc
gaggaagagagcgagaaccgctcccacggccgccgccgttcccgtcaccgcaacgcccgt
cgccgcggtcatggcgatcgcgtccgcagcgacatcgtcgagggcctcgacgccggcgcc
gatccgtcggcccagccggtcgagggcgagaccctgccggcgcatgccgagggcgcctcg
caggacggcgaacatctgcacgccgaggccgagcatcacggcgagcacgatcatcacgac
cacgatcatggcgaccatgatcacgacgatcatcatcatgcccatgatcatgacgaccat
ggtcatgagggcgagcacgaacatcacggtcatgccgacgaggcgcccgcgcccgtcgca
acaatcggcgccgagcccgtggtcgcgaccgagaccgtcgccgagccgccggaggctgcc
gcttccgagccgcaagcttccgaagcctatgccgaggctctcgccgaaaccgtgacatca
gcggccgaaccggccgatgctgtgtacgcggccggggagagcgcagaggcctcgcatgcc
gaatccgccagcgacacggccgaggacgacgacgacgaagacgaggacgaggacggcgag
gaagccgaggaggaagtcgtcgaatccgtcggcggtgacgacgtgctggaggaagtgccc
gagcgcaccttccgcccgcgccgccagtacaagatccaggaagtcatcaagcgccgccag
gtcatgctggtgcaggtggtcaaggaagagcgcggcaacaagggcgcggcgctgacgacc
tatctctcgctcgccggccgctatgccgtgttgatgccgaacaccgcgcgcggcggcggc
atcagccgcaagatcaccagcgcgcaggaccgctctcgcctgaaggaagtggtgcaggat
ctggacgtgcccgagggcatgggcatcatcctgcgcaccgcaggcgccgcccgcaccaag
cccgagatcaagcgcgacttcgaatatctgatccggatgtgggagaccgtgcgcgacctg
acgctgaagtcgcaggcgccgaccctcgtctacgaggaaggctcgctgatcaagcgctcg
ctgcgcgacctctacaacaaggagatcgacgagatctcggttgccggtgaatccggctac
cgcgaagcgcgcgacttcatgaagatgctgatgcccgccaatgtcggcgcggtgaagcag
tatcgcgacggccagccgctgttctcgcgcatgggcgtcgagagccagctcgatgcgatg
ttctcgccgaccgtgcagttgcgctcgggcggctacatcgtgatcaaccagaccgaagcg
ctggtctcgatcgacgtcaactcgggacgttcgacccgcgagcaccacatcgaggacacc
gcgctcaagaccaatctggaagcgtccgaagaggtcgcccgccagcttcgcctgcgcgac
ctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgcgcg
gtcgagcgcaagctgtccgattgcctcaggcaggaccgcgcgcgcatccaggtcggccgc
atctcgcatttcggcctgctcgagatgtcgcgccagcgcatccgcgccagcgtgctggag
tcttcgaccgatccctgcccgcattgcggcggcaccggccatgtccgctcggtgtcctcg
gtggcgctccagctcctgcgcggcctcgaagagatcctgatgaagggcgcgacccacaat
ctcgtggtccgcacccgcaccgacgtcgcgctctatgtgctgaaccacaagcgcggccat
ctgcgcgacctcgagaacggcttcaaggtcacgctgtcggtcatcgccgaccccagcgtc
agcggaccgcaggcctatctcatcgaccgcggcgagcaggtccatacgctggaagccgcc
aaggcgctgctcgcggcgcaggcggcagcgagcccgccgcccgtggccgaagaggcctat
gacgacgatgaattcgatccggagctggaatccgaggtcgagaccgaagagaccgaaggt
ctcaccgaagagcaggcttcaggcgatgcctcgcccgagcaggacggccagcgccgcaag
cgccgccgtcgtcgccgcggccgcggcggccagcgcgacggcgaggtgcgcgaggatggc
gccccagtgtcgtccgaagcggcagtcgcagccggcgaaggtgaagaggacgccgagtcc
gagcaggacggcgaggaaggcgaggaccaggccgcccgcggcgagcagcagggcagcgcc
gatcgccgccgccggcgtggtcgccgtggcggacgccgtcggcgcggcggtggcgaggac
ggtctcgccggctccatcagcgacgagcttgcggccggcgcgccgccggaagcgaccgac
gcggttgccgatttcgacggcgccggcggcgagcctgccccctcgatcgggcaggccgag
cacatcgccgagccacagttcactcagcccgagccgcgcgccgaagtgcgtaccgaggcg
cccgcccagccggagcccacgccggctgccgttgctgcagaagaagagcccgccgacgac
agggccgcgcgtcgccgctccacggtccgggaaaaggtgagcttcctgtcgagcagccca
agcgagccggccacgccggttgagcaggcagccgaaccgattgccccgccgccggcacct
gagcctgcgccggagcccgccagcgaaaccccggccgcgccgcgtcgtgccggctggtgg
tcgcgccgcttcggcggcggtgaataa
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