Bradyrhizobium xenonodulans: I3J27_20845
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Entry
I3J27_20845 CDS
T09324
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3J27_20845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxn03019
]
I3J27_20845
Messenger RNA biogenesis [BR:
bxn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I3J27_20845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
RNase_J_C
Lactamase_B_2
PSMdelta
Motif
Other DBs
NCBI-ProteinID:
WBL75491
UniProt:
A0ABY7MD82
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Position
complement(4437182..4438852)
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AA seq
556 aa
AA seq
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MAKPDELVFAPLGGVGEIGMNLSIYGLGNRQQRSWLAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKCAAERNAPKI
PVTVVPSGGRVDIGPFNVEFIPVAHSIPESHALAIHTDVGTVLHTGDWKIDPTPIIGRPT
DEKRLRELGDAGLIALIGDSTNAVRDGRSPSEAEVAKTIVELVKAAKGRVAVTTFASNVA
RLKAVAAAARAADREVVVVGRAMERVVQVARETGYLDGVQNFRSPEVYGHLPQDKVLALC
TGSQGEPRAALARIANDDHPEITLNRGDSVIFSSRTIPGNEKAVGSIINNLVLQGVEIIT
DRDHLVHVSGHPRRDELRDMIAWTRPQLLIPVHGEALHLHEHAKLARAAGVPRVLVVRNG
DLVKLGPGDPGIVGEVPSGRLYKDGNILEDSKSRAVVERRRMAFSGCAFVAIAMTAQGEL
ADDPEVDLVGIPEKNRAGEPFDDIVFDAVVSTVEGLPKARRRDPDALAESVRRAVRAVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccgacgaactggtgtttgcgccactcggcggtgtcggcgagatcggcatg
aacctgtcgatctacggtctcggcaaccgccagcagcggtcctggctggcggtcgatctc
ggcgtctccttcggcgatgaggagcatctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggaacgcaagaacctgatgggcctggtgctgacccacgcccatgag
gaccatttcggtgccatcatcgacctctggccgaaactgaaatgcccgatctacgcgacc
cagttcagcgccgcgctgttcgaggccaagtgcgccgccgaacgcaacgccccgaagatt
ccggtgaccgtggtgccttcgggcgggcgcgtcgatatcggcccgttcaacgtcgagttc
atccccgtcgcgcattcgataccggagtcgcacgctctggcgatccacaccgacgtcggg
accgtgctgcacaccggcgattggaagatcgacccgacaccgatcatcggtcgtcccact
gacgaaaagcggctgcgcgaattgggcgatgcgggcctgatcgccctgatcggcgattcc
accaacgcggtgcgtgacggccgctcgccctcggaagccgaggtcgccaaaaccattgtc
gagctggtcaaggccgccaaggggcgggtcgcagtgacgacctttgcctccaacgtcgcg
cgcctcaaggccgtcgcggccgcggccagggccgccgatcgcgaggtcgtcgtggtcggc
cgcgccatggagcgcgtcgtgcaggtcgcgcgcgagaccggctatctcgacggcgtgcag
aatttccgctcgcccgaggtctatggccatctgccgcaggacaaggtgctggcgctttgt
accggcagccagggcgagccgcgcgccgcgctggcgcgcatcgccaatgacgaccatccc
gagatcaccctcaaccgcggcgacagcgtcatcttctcctcgcgcaccatcccgggcaac
gagaaggcggtcggctcgattatcaacaatctggtgcttcaaggcgtcgagatcatcacc
gaccgcgaccatctggtccacgtctccggccatccccgccgcgacgagctgcgcgacatg
atcgcctggacccggccgcagctcctgatccccgttcatggcgaggccctgcacctgcat
gagcacgccaagctcgcgcgcgccgccggcgtgccccgcgtgctggtcgtccgcaatggc
gacctggtcaagctcggccccggcgatcccggcatcgtcggcgaggtgccgtcgggccgt
ctctacaaggacggcaacatcctggaggattccaagtcccgcgccgtggtcgagcggcgc
cgcatggccttctccggctgcgccttcgtcgccatcgccatgaccgcgcagggcgagctc
gccgacgatcccgaggtcgatctggtcggcattcccgagaagaaccgggccggcgagccc
ttcgacgacatcgtgttcgatgccgtggtctccaccgtcgaaggcctgccgaaggcgcgc
cgcagggatcccgacgctttggccgagtcggtgcgacgcgccgtccgggccgtcatcaac
gaacattggggcaaaaagcccccctgtctggtacacgtcctgacagtttag
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