Bradyrhizobium xenonodulans: I3J27_23245
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Entry
I3J27_23245 CDS
T09324
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I3J27_23245 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bxn03021
]
I3J27_23245 (rpoC)
03400 DNA repair and recombination proteins [BR:
bxn03400
]
I3J27_23245 (rpoC)
Enzymes [BR:
bxn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I3J27_23245 (rpoC)
Transcription machinery [BR:
bxn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I3J27_23245 (rpoC)
DNA repair and recombination proteins [BR:
bxn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I3J27_23245 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
WBL75945
LinkDB
All DBs
Position
complement(4890101..4894297)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLEASLRVEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
AKVIHLHTKIKYRWQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHGKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDIRDSSGKVIIKRDTLMEESHLEAIHQGGVQEVKIRSALTCELVNGICGKCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVEANFDGKIVIRNKAIA
RNSEGHLIAMVRNMVVAIVDADGTERATHRVQYGSRLHVDEGDTVKRGQRIVEWDPYTRP
LLTEVEGTIGFEDLIEGLSISETLDEATGIAKRVVIDWRSTRGGGDLRPAIVVKGKDGKV
LKLARGGDARYMLSVDGILSVDIGAKVQAGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEISGTIRFGRDYKNKRRISIEPMDKTEEAREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQVDKIEFDALNEKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKMILDEREKQA
AVVSPAPEAELPALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaacccgacgactccggctcaggtcttcgaccag
atccggatctcgatcgcgtctcccgagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgccgcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggccttctgctggacatgacgctgaaggatctcgagcggatcctc
tacttcgaatattacgtcgtgctcgagccgggtctcaccgcgctcaaggaccgtcagctc
ctgtcggaagacgagtatctgaaggcgcaggacgagtatggccaggattccttcaccgcc
atgatcggcgccgaagcgatccgcgagctgctcaagggcatggacctcgagaagctcgag
gcctccttgcgtgtcgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggttccggtgattccaccggacctgcgtccgctggtaccgctcgacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgcgcgcccgacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctattcgcggcttgacgccaagggcctgtccaccaccgtgaagcaggccaag
aagctggtcgagaaggagcggcccgaggtctgggacatcctggacgaggtcatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctcggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtgtgctccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctcgatcatgcgtgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtaccggtggcagggcatggacgagacc
ggcaaggtctcgacgcgctggatcgagaccaccgccggccgcgtcatgctgggcaatctg
ctgccgaagaacccgcggatttcgtacgagatcatcaacaagctgatgaccaagcgcgag
atctcgggcgtgatcgaccaggtctaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcatggcaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggcctgatcactcatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctcgaccaagaagacggcgagcggggccgatgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gagggcctctcggttctcgagtacttcaactcgacccacggcgcccgcaagggccttgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgtcgtctcgtcgacgtcgcg
caggactgcatcatcacgcagagcgactgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtggcttcgctcggctcgcgcatcctcggacgcacggcc
tgcgaagacatccgtgacagctcgggcaaggtgatcatcaagcgcgatacgctgatggaa
gaaagccatctggaggccatccatcagggtggtgtgcaggaggtgaagatccgctcggcg
ctgacctgcgagctcgtcaacggcatctgcggcaagtgctacggccgcgacctcgcccgc
ggcacgccggtcaaccacggcgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggtggtgcggcgcagctgaacgag
cagtccttcgtcgaagccaacttcgacggcaagatcgtgatcaggaacaaggccatcgcc
cgcaacagcgaaggtcacctgattgcgatggtgcgcaacatggtggtggcgatcgtcgat
gccgacggcaccgagcgtgcgacgcaccgtgtccaatacggctcgcgtctgcacgtcgac
gagggcgacaccgtcaagcgcggccagcgcatcgtcgagtgggacccgtacacccgtccg
cttctcaccgaagtggaaggaaccatcggcttcgaggacttgatcgagggtctgtcgatt
tcggaaacgctggacgaagccaccggtatcgccaagcgcgtggtcatcgactggcgctcg
acccgcggcggcggggacctgcgtcccgccatcgtggtcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgacggcattctgtcg
gtcgacatcggagccaaggtccaggcgggtgacatcctcgcccgtgtctcgaccgaaagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcacgg
cgtccgaaggatgcggcgatcatcgccgaaatctcgggcaccatccggttcggacgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgaagaggcgcgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtggaaggcaacccggcgccgcacgacatccttgcggtcaagggcatcgag
gagcttgcggcctatctggtcaacgaaatccaggaggtctaccggcttcagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctccggcgagcaggtcgacaagatcgagttcgacgcg
ctgaacgagaaggccaaggaagagggcaagaagatcgccacgggtacgccggttctgctc
ggcatcaccaaggcgagcctccagacccgctccttcttctcggcggcctcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccggctgatcccggcgggcaccggcgcctccatggccaag
atccgcgaagtcgccgtgaagcgcgacaagatgatcctggacgagcgcgagaagcaggcg
gccgtcgtgtcgcccgcgccggaagcggagcttcctgcgctgccgcctgcggaatga
DBGET
integrated database retrieval system
