Bradyrhizobium xenonodulans: I3J27_35725
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Entry
I3J27_35725 CDS
T09324
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bxn
Bradyrhizobium xenonodulans
Pathway
bxn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bxn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3J27_35725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bxn03019
]
I3J27_35725
Enzymes [BR:
bxn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I3J27_35725
Messenger RNA biogenesis [BR:
bxn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I3J27_35725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
HEM4
Motif
Other DBs
NCBI-ProteinID:
WBL78231
UniProt:
A0ABY7MII2
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All DBs
Position
7581496..7583094
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AA seq
532 aa
AA seq
DB search
MRRATAFDMERTHLLTSFQDFGLAEPIARALREENYVTPTPIQAQTIPTALTGRDVVGIA
QTGTGKTASFALPILHRLLENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSS
TLAIGGVPMGRQVRALMQGVDVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGF
INDIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIQQRIIQ
VDFTAKPAFLAKLLKQEPVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRER
TLAQFRTGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAI
SLVAGGEELSYLRDIERLIKVALPREDLRTDAGRSDAGPPPSQQRQGRPGRPGQRPQGAR
HGGDGRRADDRRADNRHSASKQADGRPGEGRHGDGRHADARHVDGRPGNGPNGSKGSRGR
RGSGGKVNSSPANRSEQRPAHSAGKPDGIQGVAFLRRESRPTGRPNRNPHSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgggcgaccgcttttgacatggaaagaacccatcttttgacttcgtttcaggac
ttcggcctcgccgaaccgatcgcacgtgctcttcgtgaagagaactacgtcacccccacc
cccattcaggcccagaccatccccacggcactcaccggccgcgacgtcgtcggcatcgcc
cagaccggcacgggcaagacggcatcctttgcgctgccgatcctgcaccgcctgctggag
aaccgcatcaagcctcagcccaagacctgccgggtgctggtgctctcgcccacccgcgag
ctgtccggccagatcctcgacagcttcaacgcctatggccgccacatccgcctgtcctcg
acgctcgccatcggcggcgtgccgatgggccgccaggtccgcgcgctgatgcaaggcgtc
gacgtgctggtcgccacgcccggccgtctgctcgatctcgtgcagagcaacgggctgaag
ctctccagcgtcgaattcctcgttctcgacgaggccgaccgcatgctcgacatgggcttc
atcaacgacatccgcaaaatcgtcgcgaaactcccgatcaagcggcagacgctgttcttc
tcggccaccatgccgaaggacatcgccgagctcgcggactcgatgctgcgtgatcccgcc
cgcgtcgccgtgacgccggtatcctcgaccgtggagcgcatccagcagcgcattatccag
gtcgacttcacggccaagccggcgttccttgccaagctgttgaaacaagagccggtcaac
cgcgcattggttttcacccgcaccaagcacggcgccgacaaggtcgtgaagacgcttgag
aaggccggcattcccgccagcgccatccatggcaacaagtcgcagaaccatcgcgagcgg
acgctcgcccaattccgcactggcgagatccgcaccttggttgccaccgacatcgccgcc
cgcggcatcgacgtcgacggcatcacccacgtgatcaatttcgaccttcccaacgtgccc
gagacctatgttcaccgcatcggccgcactgcgcgggcgggcgctgagggtaccgcgatc
tcgctggtcgccggcggcgaggaactcagctatctccgcgacatcgagcggctgatcaaa
gtggcgctgccgcgcgaagacctccgcacggatgcggggcgcagcgatgcgggcccgccc
ccgtcgcagcaacggcaagggcgaccgggccgcccaggccagcgcccgcaaggcgcaagg
catggtggtgatggacggcgcgccgacgacaggcgtgccgacaaccggcatagcgccagc
aagcaggccgacggacggcccggcgaaggccggcacggtgacggacggcatgccgatgca
aggcatgttgacggaaggcccgggaatggcccgaacggctcgaaggggtctcgcggccgc
cgcggttccggtggtaaggtgaactcctcaccagccaatcggtcggaacagcgtcccgcg
catagcgctggcaagcctgatggaatacaaggcgttgcctttttgcgtcgcgagagtcgt
cccaccggccgaccgaaccgcaatcctcattcgcactag
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