Bacteroides xylanisolvens: BXY_44620
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Entry
BXY_44620 CDS
T02579
Name
(GenBank) Uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bxy
Bacteroides xylanisolvens
Brite
KEGG Orthology (KO) [BR:
bxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bxy03016
]
BXY_44620
Enzymes [BR:
bxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BXY_44620
Transfer RNA biogenesis [BR:
bxy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BXY_44620
Prokaryotic type
tRNA splicing ligases
BXY_44620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TAF1_subA
Motif
Other DBs
NCBI-ProteinID:
CBK69339
UniProt:
D6D4U5
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All DBs
Position
complement(5443990..5445387)
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AA seq
465 aa
AA seq
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MGIRLKDLSKLGYRDNVARSLVVDIVSKHCKYNTKEQIEMTLSDILEHPESYKNNEIWNK
LAERLSPTIVAKEFIAYDLLDGPLMYKTYGGKFIETLAKQQMNLAMRLPVTVGGALMPDA
HAGYGLPIGGVLATDNAVIPYAVGVDIGCRMSLTVFDAGADFLKRYAYQMKEALKDFTHF
GMDGGLGFEQEHEVLDREEFRLTPLLRDLHGKAVRQLGSSGGGNHFVEFGEITLQEKNVL
NLPEGSYLALLSHSGSRGLGAAIAKHYSLLAREVCRLPREAQHFAWLDLNTEEGQEYWMS
MNLAGDYARACHERIHLNLAKALGLKPLANVNNHHNFAWKEEITPGRMAIVHRKGATPAQ
KGQAGLIPGSMATPGYLVCGKGVEDALNSASHGAGRAMSRQKAKDSFTQSALKKLLSQAG
VTLIGGSVEEMPLAYKDIDRVMYTQETLVEVQGKFMPRIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgattaaaagatttaagtaaactgggataccgggataatgttgcccgcagt
ctggtagtggacattgtgagcaaacattgcaaatataacacgaaggaacagattgaaatg
acattgagcgatatactcgagcatcccgaatcttacaaaaacaatgaaatatggaataag
ctggccgaacgcctttcgccgactatagtagcgaaagagtttatagcttatgatttactg
gatgggccgttgatgtataaaacctatggaggtaaatttatcgagacgcttgccaaacaa
cagatgaacctggctatgcgcttgcccgtaacagtgggcggagcattgatgcctgacgct
catgccggatacggattacctatcggtggagtgcttgctacggataatgcggtgattccg
tatgccgtaggagttgatatcggctgccggatgagtctgacagtattcgatgccggagca
gattttctgaaacggtatgcctatcagatgaaagaagccttgaaagatttcacccatttc
ggtatggatggcggattgggttttgagcaggaacatgaagtgttggatagggaggaattc
cgtctgacgcctttattgagggatttgcatggaaaggccgtccgtcaactggggagttcc
ggtggtggcaatcattttgtagagttcggcgagatcactttgcaagaaaaaaacgtactg
aatcttccggaaggaagttacctggcattgctgtcacattccggttcacgaggattgggg
gctgctattgcaaaacattacagtctgctggcacgtgaagtgtgcaggcttcctcgtgaa
gcacaacattttgcttggttggatttgaacacggaagagggacaggagtattggatgagt
atgaatctggcaggtgattatgcccgtgcctgtcatgaacggattcatttgaatttggcg
aaagccttggggttgaagcctctcgctaatgtcaataatcatcataacttcgcttggaaa
gaggaaataacaccgggacgtatggcgatcgtccatcgtaaaggggctactccggcgcaa
aagggacaagcgggattgattcccggaagtatggccaccccgggttatctggtgtgtggc
aaaggggtggaagatgcgttgaattcggcttctcatggagccggcagggcaatgtcccgc
caaaaggcaaaagatagttttacgcaatcggctttgaagaagttactgtcgcaagcagga
gtaactttgattggtgggagcgtggaagaaatgccgctggcatacaaggacattgacaga
gtgatgtatacgcaggagacactagtggaagtgcaaggcaaatttatgcctcgcattgta
cgaatgaataaggaatga
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